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The map label for this gene is yfhA [C]

Identifier: 15675054

GI number: 15675054

Start: 871198

End: 871986

Strand: Direct

Name: yfhA [C]

Synonym: SPy_1062

Alternate gene names: 15675054

Gene position: 871198-871986 (Clockwise)

Preceding gene: 15675053

Following gene: 15675055

Centisome position: 47.03

GC content: 34.73

Gene sequence:

>789_bases
ATGTACAAATTAGTCATTATTGAAGATGAACATATTATTAGGAAATGGTTGCGATACGCTATTGATTATAAAGCTTTAGA
TATTTTGGTCATTGGCGAGGCTAAAGATGGCAAAGAAGGAGCTGTTTTAATCAAAGAGAGTCAACCAGATATCGTTTTAA
CCGATATTAACATGCCCATCATGACAGCTTTTGACATGTTTGAAGTAACAAAAGATCAAACTTACGCCAAAATTATTTTA
TCTGGCTATGCTGATTTTCCAAATGCAAGGTCTGCCATACACTACGGTGTACTTGAATTTTTAACAAAACCGATTGAAAA
AGCAGCTCTTTGGGAATGTCTTCAAACCATTATTGCTAAAATAGAAAAGCAAAAGGGGTCTAATCAAAAAACAGATGCTT
GCGTCTATATTCCCTTACCCCAGATGACTGATCAGATTCCTGAAGTAGTCAAAGATATTTTGGAGTGGGTACATGCTCAT
TTTCAAGACAAGATCAGCACGAGCCGCCTAGCTCATGACTTAGGGTATAGTGAGAGTTATATCTATCAAAATATCAAAAA
GCATCTTCAGATGCCTTTAAGTGATTACATTAATCAATATCGGATTAATCAGGCAATTCAATTGATGCAACAAGAACCAG
ATTTAATGGTATATGAAATAGCACAAGCTGTAGGTATTTATGACTATCGCTATTTTGATAGGGTTTTTAAAAAGTATCTA
GGACAAACTGTAAAGGCTTTTAAAGAAGAGCATTTTATGAAAGATACCGATAGGAGTAAGCCATGTTAA

Upstream 100 bases:

>100_bases
CTCTTATCGTCGGCTTAAGTATCATTTTTCAGAAGTATCCTTGGTTTTTGATCAAGGTGATAAACAGTTTAATGTTAGTT
ACCATGTTAAGGAGTAGTCT

Downstream 100 bases:

>100_bases
AACTCAAACGCAAATGGCTATTAAGCTTTTTGTTAGTAATAATTATTCTAGCAATCGTTAACGTTGCAATGTATATATTC
TCATCGTCAAAAAAAGATAG

Product: putative two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEVTKDQTYAKIIL
SGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAH
FQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYL
GQTVKAFKEEHFMKDTDRSKPC

Sequences:

>Translated_262_residues
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEVTKDQTYAKIIL
SGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAH
FQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYL
GQTVKAFKEEHFMKDTDRSKPC
>Mature_262_residues
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEVTKDQTYAKIIL
SGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAH
FQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYL
GQTVKAFKEEHFMKDTDRSKPC

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30562; Mature: 30562

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPI
CEEEEEECCHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCHH
MTAFDMFEVTKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESY
HHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GQTVKAFKEEHFMKDTDRSKPC
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPI
CEEEEEECCHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCHH
MTAFDMFEVTKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESY
HHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GQTVKAFKEEHFMKDTDRSKPC
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA