Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is potD [C]
Identifier: 15675055
GI number: 15675055
Start: 872055
End: 873026
Strand: Direct
Name: potD [C]
Synonym: SPy_1063
Alternate gene names: 15675055
Gene position: 872055-873026 (Clockwise)
Preceding gene: 15675054
Following gene: 15675056
Centisome position: 47.08
GC content: 39.51
Gene sequence:
>972_bases ATGTATATATTCTCATCGTCAAAAAAAGATAGTGCTAAAGAATTAGTTATCTTGACTCCTAATAGCCAAACTATTTTAAC AGGGACTATTCCAGCCTTTGAGGAAAAGTATGGGGTTAAAGTAAGATTAATCCAAGGTGGGACGGGCCAACTTATTGATC AATTAGGTCGAAAAGATAAACCATTAAACGCTGATATTTTCTTTGGTGGCAATTACACTCAATTTGAAAGCCATAAAGAT TTATTTGAATCTTATGTTTCTCCGCAGGTTTCTACTGTCATTTCAGATTACCAATTGCCTAGTCATCGCGCAACCCCATA TACGATCAATGGCAGTGTACTGATTGTTAATAACGAATTAGCAAGAGGACTTCATATTACCAGTTATGAGGATTTGCTAC AACCAGCTTTAAAAGGCAAAATTGCTTTTGCTGATCCCAACAGTTCATCAAGTGCCTTCTCACAGCTGACTAATATATTG TTAGCTAAGGGGGGGTACACAAACGCTGACGCTTGGGCTTACATGAAGCGCTTGTTGGTCAATATGAATTCTATTAGGGC TACGAGTTCTTCAGAAGTCTATCAATCTGTCGCTGAGGGTAAGATGATTGTTGGGCTAACCTACGAAGATCCTTGTATCA ACCTGCAAAAAAGTGGTGCCAATGTTTCCATTGTTTATCCAAAAGAAGGAACGGTGTTTGTGCCCTCCTCTGTTGCTATT ATCAAACATGCGCCAAACATGACAGAGGCTAAGCTCTTTATTAATTTTATGTTATCACGTGATGTGCAAAATGCCTTTGG CCAATCAACCAGTAACCGACCCATTCGTCAAGATGCCCAAACCAGTCACGACATGAAAGCCTTAGAAACGATAGCTACTT TGAAAGAGGATTATGCTTATGTTACCAAGCACAAGAAAAAAATAGTGGCTACGTACAACCAGTTGCGCCAACGGTTGGAA AAAGCTAAGTAG
Upstream 100 bases:
>100_bases TGAAAGATACCGATAGGAGTAAGCCATGTTAAAACTCAAACGCAAATGGCTATTAAGCTTTTTGTTAGTAATAATTATTC TAGCAATCGTTAACGTTGCA
Downstream 100 bases:
>100_bases GAGTTAAAAGTATGGTATTGTCAACTTGAAAAAGGTCCTAAGGCCTTTTTTCTATGTTATAATTAAGAATCATCTTCAGT TGAGAAAGTAAGGATTATGC
Product: putative periplasmic-iron-binding protein
Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE KAK
Sequences:
>Translated_323_residues MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE KAK >Mature_323_residues MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE KAK
Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787367, Length=161, Percent_Identity=26.7080745341615, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 35780; Mature: 35780
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDK CEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCEEEEEECCCHHHHHHHCCCCC PLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNEL CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEEEECHH ARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLV HCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI HHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCEECCCCEEE IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAY EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VTKHKKKIVATYNQLRQRLEKAK HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDK CEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCEEEEEECCCHHHHHHHCCCCC PLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNEL CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEEEECHH ARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLV HCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI HHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCEECCCCEEE IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAY EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VTKHKKKIVATYNQLRQRLEKAK HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]
Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]