Definition Streptococcus pyogenes M1 GAS chromosome, complete genome.
Accession NC_002737
Length 1,852,441

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The map label for this gene is potD [C]

Identifier: 15675055

GI number: 15675055

Start: 872055

End: 873026

Strand: Direct

Name: potD [C]

Synonym: SPy_1063

Alternate gene names: 15675055

Gene position: 872055-873026 (Clockwise)

Preceding gene: 15675054

Following gene: 15675056

Centisome position: 47.08

GC content: 39.51

Gene sequence:

>972_bases
ATGTATATATTCTCATCGTCAAAAAAAGATAGTGCTAAAGAATTAGTTATCTTGACTCCTAATAGCCAAACTATTTTAAC
AGGGACTATTCCAGCCTTTGAGGAAAAGTATGGGGTTAAAGTAAGATTAATCCAAGGTGGGACGGGCCAACTTATTGATC
AATTAGGTCGAAAAGATAAACCATTAAACGCTGATATTTTCTTTGGTGGCAATTACACTCAATTTGAAAGCCATAAAGAT
TTATTTGAATCTTATGTTTCTCCGCAGGTTTCTACTGTCATTTCAGATTACCAATTGCCTAGTCATCGCGCAACCCCATA
TACGATCAATGGCAGTGTACTGATTGTTAATAACGAATTAGCAAGAGGACTTCATATTACCAGTTATGAGGATTTGCTAC
AACCAGCTTTAAAAGGCAAAATTGCTTTTGCTGATCCCAACAGTTCATCAAGTGCCTTCTCACAGCTGACTAATATATTG
TTAGCTAAGGGGGGGTACACAAACGCTGACGCTTGGGCTTACATGAAGCGCTTGTTGGTCAATATGAATTCTATTAGGGC
TACGAGTTCTTCAGAAGTCTATCAATCTGTCGCTGAGGGTAAGATGATTGTTGGGCTAACCTACGAAGATCCTTGTATCA
ACCTGCAAAAAAGTGGTGCCAATGTTTCCATTGTTTATCCAAAAGAAGGAACGGTGTTTGTGCCCTCCTCTGTTGCTATT
ATCAAACATGCGCCAAACATGACAGAGGCTAAGCTCTTTATTAATTTTATGTTATCACGTGATGTGCAAAATGCCTTTGG
CCAATCAACCAGTAACCGACCCATTCGTCAAGATGCCCAAACCAGTCACGACATGAAAGCCTTAGAAACGATAGCTACTT
TGAAAGAGGATTATGCTTATGTTACCAAGCACAAGAAAAAAATAGTGGCTACGTACAACCAGTTGCGCCAACGGTTGGAA
AAAGCTAAGTAG

Upstream 100 bases:

>100_bases
TGAAAGATACCGATAGGAGTAAGCCATGTTAAAACTCAAACGCAAATGGCTATTAAGCTTTTTGTTAGTAATAATTATTC
TAGCAATCGTTAACGTTGCA

Downstream 100 bases:

>100_bases
GAGTTAAAAGTATGGTATTGTCAACTTGAAAAAGGTCCTAAGGCCTTTTTTCTATGTTATAATTAAGAATCATCTTCAGT
TGAGAAAGTAAGGATTATGC

Product: putative periplasmic-iron-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD
LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL
LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI
IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE
KAK

Sequences:

>Translated_323_residues
MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD
LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL
LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI
IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE
KAK
>Mature_323_residues
MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDKPLNADIFFGGNYTQFESHKD
LFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNELARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNIL
LAKGGYTNADAWAYMKRLLVNMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI
IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAYVTKHKKKIVATYNQLRQRLE
KAK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787367, Length=161, Percent_Identity=26.7080745341615, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 35780; Mature: 35780

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDK
CEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCEEEEEECCCHHHHHHHCCCCC
PLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNEL
CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEEEECHH
ARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLV
HCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
NMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI
HHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCEECCCCEEE
IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAY
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTKHKKKIVATYNQLRQRLEKAK
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYIFSSSKKDSAKELVILTPNSQTILTGTIPAFEEKYGVKVRLIQGGTGQLIDQLGRKDK
CEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHCCCCEEEEEECCCHHHHHHHCCCCC
PLNADIFFGGNYTQFESHKDLFESYVSPQVSTVISDYQLPSHRATPYTINGSVLIVNNEL
CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCEEEEEECHH
ARGLHITSYEDLLQPALKGKIAFADPNSSSSAFSQLTNILLAKGGYTNADAWAYMKRLLV
HCCEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
NMNSIRATSSSEVYQSVAEGKMIVGLTYEDPCINLQKSGANVSIVYPKEGTVFVPSSVAI
HHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCEEEEEECCCCCEECCCCEEE
IKHAPNMTEAKLFINFMLSRDVQNAFGQSTSNRPIRQDAQTSHDMKALETIATLKEDYAY
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VTKHKKKIVATYNQLRQRLEKAK
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]