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The map label for this gene is scpB

Identifier: 15674517

GI number: 15674517

Start: 316695

End: 317246

Strand: Direct

Name: scpB

Synonym: SPy_0367

Alternate gene names: 15674517

Gene position: 316695-317246 (Clockwise)

Preceding gene: 15674516

Following gene: 15674518

Centisome position: 17.1

GC content: 38.22

Gene sequence:

>552_bases
ATGACGTATTTGTCACAGATAGAAGCGCTGCTATTTGTTGCAGGTGAAGAAGGATTAAGTTTGCGACATCTAGCGTCTAT
GTTATCATTAACGCCAACAGCTCTTCAACAGCAATTAGAAAAACTCTCTCAAAAGTATGAAAAAGATCAACATTCTAGTC
TTTGCTTGATAGAAACAGCTAATACCTACAGGCTAGTAACTAAAGAAGGTTTTGCAGAACTCTTGCGTGCTTATGCCAAA
ACACCAATGAACCAAAGTTTATCTCGTGCGAGTTTAGAGGTCTTGTCTATTGTTGCATACAAACAACCTATTACACGAAT
AGAAATTGATGACATTCGAGGGGTAAACTCCAGTGGAGCTTTGAGTAAATTATTGGCATTTGATCTCATTAGAGAAGCTG
GCAAAAAAGATGTGGTTGGGCGTCCTCATTTGTATGCGACAACAGATTATTTTCTGGACTATATGGGAATTAATCATTTA
GACGAATTGATTGAAGTATCTGCCGTTGAACCAGCAGATGAAGAGATTGCTCTTTTTAGGACACAAGACTGA

Upstream 100 bases:

>100_bases
TCAGTATATTTTTAGCTAGTCTAGAATTGATTAAGCTTCACGTGGTATTTGTAGAGCAGCTCTCTAATTTTGGGGCTATC
ATACTACGAAAGGAGAAGAA

Downstream 100 bases:

>100_bases
GTTTTGCTTGTCATCAAATAGCAAATGGCGTTTACAAAAGGATTTGTTTTAAGGCGTTTTAGTTGAAAAAAAAGCCTTAA
ACTAGGGACAACAAAAAGTT

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTYLSQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYRLVTKEGFAELLRAYAK
TPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKLLAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHL
DELIEVSAVEPADEEIALFRTQD

Sequences:

>Translated_183_residues
MTYLSQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYRLVTKEGFAELLRAYAK
TPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKLLAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHL
DELIEVSAVEPADEEIALFRTQD
>Mature_182_residues
TYLSQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYRLVTKEGFAELLRAYAKT
PMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKLLAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLD
ELIEVSAVEPADEEIALFRTQD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_STRP1 (P60220)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_268691.1
- RefSeq:   YP_281673.1
- ProteinModelPortal:   P60220
- SMR:   P60220
- EnsemblBacteria:   EBSTRT00000000339
- EnsemblBacteria:   EBSTRT00000029158
- GeneID:   3572599
- GeneID:   900640
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_0367
- KEGG:   spz:M5005_Spy_0309
- GeneTree:   EBGT00050000028093
- HOGENOM:   HBG752450
- OMA:   TYKLTTS
- ProtClustDB:   PRK00135
- BioCyc:   SPYO160490:SPY0367-MONOMER
- BioCyc:   SPYO293653:M5005_SPY0309-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 20496; Mature: 20364

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYLSQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETA
CCHHHHHHHHHHEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NTYRLVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGA
CCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCHH
LSKLLAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDELIEVSAVEPADEEIALFR
HHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEE
TQD
ECC
>Mature Secondary Structure 
TYLSQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETA
CHHHHHHHHHHEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NTYRLVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGA
CCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCHH
LSKLLAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDELIEVSAVEPADEEIALFR
HHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEE
TQD
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296