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The map label for this gene is xerD

Identifier: 15674515

GI number: 15674515

Start: 315251

End: 315997

Strand: Direct

Name: xerD

Synonym: SPy_0365

Alternate gene names: NA

Gene position: 315251-315997 (Clockwise)

Preceding gene: 15674514

Following gene: 15674516

Centisome position: 17.02

GC content: 32.8

Gene sequence:

>747_bases
ATGAAGAGTTATATTGAACCTTTTATTGCTAGCAAGGCTTTATCTCAAAATAGTCAAAAAGCTTATCGATACGATTTGCA
ACAGTTTTGTCAACTGATTGGTGAACGTGTCAATCAAGACAAACTATTACTTTATCAAAATAGCATAGCTAACCTAAGTT
TATCTGCAAAAAAACGCAAATTATCAACAGCTAATCAATTCTTATATTACTTGTATCAAATAAAGTATTTAAATAGCTAT
TTTCGATTAACAGACACCATGAAAGTGATGCGGACTGAGAAGCAGCAAGCTGCTATTATTAATACTGATATTTTCTATCA
AAAAACCCCTTTTGTGTGGGGGCAATTAATCAGCTTATTAATATTGGAGCTGGGTTTAACTCCGAGTGAAGTAGCTGGTA
TTGAAGTAGCTAACTTGGATTTAAATTTTCAAATGTTGACGCTAAAGACTAAAAAAGGTGTGCGTGTATTACCTTTATCG
CAAATACTAATCCCTTTTTTAGAACAACAACTCGTTGGCAAAGAAGTCTATCTTTTTGAACATCGAGGCATCCCTTTTTC
AAGACAATGGTTTTTTAATCACCTAAAAACCTTTGTTCGAAGTATTGGTTATGAAGGATTGACTGCTCAAAAATTACGAG
AGCAATTTATTTTGAAAGAAAAACTAGCTGGTAAATCGATAATAGAACTTAGCGATATTCTTGGGCTGAAAAGCCCTATG
ACCTTAGAAAAATACTACAAATCATAA

Upstream 100 bases:

>100_bases
GAGCGAATCGCTTTGTTGGGATTATTACGCGAAAATCTATATTAAAGGCTGTCAACAGTCTTTTACATGATTTTACAGAT
GATTACACGATTATAAAAAA

Downstream 100 bases:

>100_bases
TGGATATAAAACTTAAAGATTTTGAAGGTCCTCTTGATTTACTCTTACACTTGGTATCACAGTACAAAGTTGACATCTAC
GAGGTTCCTATTGTTGAGGT

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLNFQMLTLKTKKGVRVLPLS
QILIPFLEQQLVGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPM
TLEKYYKS

Sequences:

>Translated_248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLNFQMLTLKTKKGVRVLPLS
QILIPFLEQQLVGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPM
TLEKYYKS
>Mature_248_residues
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIANLSLSAKKRKLSTANQFLYYLYQIKYLNSY
FRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLNFQMLTLKTKKGVRVLPLS
QILIPFLEQQLVGKEVYLFEHRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPM
TLEKYYKS

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XERDL_STRP1 (Q9A1B3)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_268689.1
- RefSeq:   YP_281671.1
- ProteinModelPortal:   Q9A1B3
- SMR:   Q9A1B3
- EnsemblBacteria:   EBSTRT00000000896
- EnsemblBacteria:   EBSTRT00000028388
- GeneID:   3572597
- GeneID:   900638
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_0365
- KEGG:   spz:M5005_Spy_0307
- GeneTree:   EBGT00050000028357
- HOGENOM:   HBG697235
- OMA:   STVNQFL
- ProtClustDB:   PRK02436
- BioCyc:   SPYO160490:SPY0365-MONOMER
- BioCyc:   SPYO293653:M5005_SPY0307-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01817
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR020876
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 28863; Mature: 28863

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: ACT_SITE 245-245

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIANLSLSAKKRK
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
LSTANQFLYYLYQIKYLNSYFRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHEEECCCHHHHHHHHHH
ILELGLTPSEVAGIEVANLDLNFQMLTLKTKKGVRVLPLSQILIPFLEQQLVGKEVYLFE
HHHHCCCHHHHCCEEEEEECCCEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
HRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPM
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
TLEKYYKS
HHHHHHCC
>Mature Secondary Structure
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIANLSLSAKKRK
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
LSTANQFLYYLYQIKYLNSYFRLTDTMKVMRTEKQQAAIINTDIFYQKTPFVWGQLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHEEECCCHHHHHHHHHH
ILELGLTPSEVAGIEVANLDLNFQMLTLKTKKGVRVLPLSQILIPFLEQQLVGKEVYLFE
HHHHCCCHHHHCCEEEEEECCCEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
HRGIPFSRQWFFNHLKTFVRSIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPM
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
TLEKYYKS
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296