Click here to switch to the map view.

The map label for this gene is yesO [H]

Identifier: 15674433

GI number: 15674433

Start: 217741

End: 219060

Strand: Direct

Name: yesO [H]

Synonym: SPy_0252

Alternate gene names: 15674433

Gene position: 217741-219060 (Clockwise)

Preceding gene: 15674432

Following gene: 15674434

Centisome position: 11.75

GC content: 39.7

Gene sequence:

>1320_bases
ATGAACATGAAGAAGTTAGCTTCATTAGCGATGCTTGGTGCATCTGTTTTAGGACTAGCAGCTTGTGGCGGAAAGAGCCA
GAAAGAGGCTGGTGCAAGTAAATCTGATACTGCTAAGACAGAAATCACATGGTGGGCTTTCCCGGTCTTCACGCAAGAAA
AAGCTGAAGATGGTGTGGGAACCTATGAGAAGAAATTGATTGCTGCCTTTGAGAAAGCTAATCCAGAAATCAAGGTAAAA
TTGGAAACCATTGATTTTACATCTGGTCCTGAGAAAATCACAACTGCTATTGAAGCTGGAACAGCTCCTGATGTCCTCTT
TGATGCTCCAGGTCGTATCATTCAATATGGTAAAAATGGGAAATTGGCTGACTTGAATGACTTGTTCACAGAAGAGTTTA
CCAAAGATGTTAACAATGACAAATTGATTCAAGCCTCAAAAGCAGGAGATACAGCTTACATGTATCCTATCAGCTCTGCT
CCATTCTACATGGCGTTGAATAAAAAAATGCTCAAAGATGCTGGCGTCCTTGATCTTGTGAAAGAGGGTTGGACAACAGA
TGATTTTGAAAAAGTCTTGAAAGCATTGAAGGACAAAGGATATAACCCAGGTTCTTTCTTTGCTAATGGTCAAGGTGGTG
ACCAAGGACCACGTGCCTTCTTTGCTAACCTTTATAGTAGTCATATTACCGATGACAAAGTAACCAAATACACCACAGAT
GATGCTAACTCTATTAAAGCCATGACCAAGATTTCCAATTGGATTAAAGATGGTTTAATGATGAATGGCTCTCAGTACGA
TGGTTCAGCTGATATTCAAAACTTTGCGAATGGCCAAACTTCCTTTACCATTCTTTGGGCGCCTGCACAACCAGGCATCC
AAGCTAAATTGTTAGAAGCTAGTAAAGTGGATTACCTTGAAATCCCATTCCCATCAGATGATGGCAAACCAGAACTAGAA
TACCTCGTAAATGGTTTTGCGGTCTTTAATAACAAAGATGAACAAAAAGTCGCTGCCTCTAAGACATTTATCCAATTTAT
CGCTGATGATAAAGAATGGGGACCTAAAAATGTTGTTCGTACAGGTGCTTTCCCTGTAAGAACTTCTTATGGGGATCTTT
ACAAAGACAAACGAATGGAAAAAATTGCTGAATGGACAAAATTCTACTCACCATACTATAACACGATTGATGGGTTTGCT
GAAATGAGAACTCTTTGGTTCCCAATGGTTCAAGCCGTCTCTAATGGTGATGAAAAGCCAGAAGATGCTTTGAAAGCCTT
CACTGAAAAAGCAAACAAGACAATCAAAAAAACACAATAA

Upstream 100 bases:

>100_bases
CACAAGGCCTAAGGAAATTGCAGAGCGTTTTATCGAAGCGCTCAAATCCTAATAGTGGTTGTCAAACTAGAAACACACAT
CAAAAAAAGGAGATTTTACG

Downstream 100 bases:

>100_bases
GTGTTCCTAACAAGTGGCTTCTTTTCAATGCACATGTCAAATGGTCACTGGAAAGAAGCTTTTCTTTTTAGAAAAGTTGA
ACAGAAAAAAGAGGTATTTC

Product: N-acetylneuraminate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNMKKLASLAMLGASVLGLAACGGKSQKEAGASKSDTAKTEITWWAFPVFTQEKAEDGVGTYEKKLIAAFEKANPEIKVK
LETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLADLNDLFTEEFTKDVNNDKLIQASKAGDTAYMYPISSA
PFYMALNKKMLKDAGVLDLVKEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAFFANLYSSHITDDKVTKYTTD
DANSIKAMTKISNWIKDGLMMNGSQYDGSADIQNFANGQTSFTILWAPAQPGIQAKLLEASKVDYLEIPFPSDDGKPELE
YLVNGFAVFNNKDEQKVAASKTFIQFIADDKEWGPKNVVRTGAFPVRTSYGDLYKDKRMEKIAEWTKFYSPYYNTIDGFA
EMRTLWFPMVQAVSNGDEKPEDALKAFTEKANKTIKKTQ

Sequences:

>Translated_439_residues
MNMKKLASLAMLGASVLGLAACGGKSQKEAGASKSDTAKTEITWWAFPVFTQEKAEDGVGTYEKKLIAAFEKANPEIKVK
LETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLADLNDLFTEEFTKDVNNDKLIQASKAGDTAYMYPISSA
PFYMALNKKMLKDAGVLDLVKEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAFFANLYSSHITDDKVTKYTTD
DANSIKAMTKISNWIKDGLMMNGSQYDGSADIQNFANGQTSFTILWAPAQPGIQAKLLEASKVDYLEIPFPSDDGKPELE
YLVNGFAVFNNKDEQKVAASKTFIQFIADDKEWGPKNVVRTGAFPVRTSYGDLYKDKRMEKIAEWTKFYSPYYNTIDGFA
EMRTLWFPMVQAVSNGDEKPEDALKAFTEKANKTIKKTQ
>Mature_439_residues
MNMKKLASLAMLGASVLGLAACGGKSQKEAGASKSDTAKTEITWWAFPVFTQEKAEDGVGTYEKKLIAAFEKANPEIKVK
LETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLADLNDLFTEEFTKDVNNDKLIQASKAGDTAYMYPISSA
PFYMALNKKMLKDAGVLDLVKEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAFFANLYSSHITDDKVTKYTTD
DANSIKAMTKISNWIKDGLMMNGSQYDGSADIQNFANGQTSFTILWAPAQPGIQAKLLEASKVDYLEIPFPSDDGKPELE
YLVNGFAVFNNKDEQKVAASKTFIQFIADDKEWGPKNVVRTGAFPVRTSYGDLYKDKRMEKIAEWTKFYSPYYNTIDGFA
EMRTLWFPMVQAVSNGDEKPEDALKAFTEKANKTIKKTQ

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48506; Mature: 48506

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKKLASLAMLGASVLGLAACGGKSQKEAGASKSDTAKTEITWWAFPVFTQEKAEDGVG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEEEEEEECCCHHHHCCCCC
TYEKKLIAAFEKANPEIKVKLETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNG
HHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCC
KLADLNDLFTEEFTKDVNNDKLIQASKAGDTAYMYPISSAPFYMALNKKMLKDAGVLDLV
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHCCHHHHH
KEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAFFANLYSSHITDDKVTKYTTD
HCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
DANSIKAMTKISNWIKDGLMMNGSQYDGSADIQNFANGQTSFTILWAPAQPGIQAKLLEA
CHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCEEEECC
SKVDYLEIPFPSDDGKPELEYLVNGFAVFNNKDEQKVAASKTFIQFIADDKEWGPKNVVR
CCCCEEECCCCCCCCCHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHC
TGAFPVRTSYGDLYKDKRMEKIAEWTKFYSPYYNTIDGFAEMRTLWFPMVQAVSNGDEKP
CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EDALKAFTEKANKTIKKTQ
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNMKKLASLAMLGASVLGLAACGGKSQKEAGASKSDTAKTEITWWAFPVFTQEKAEDGVG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEEEEEEECCCHHHHCCCCC
TYEKKLIAAFEKANPEIKVKLETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNG
HHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCCC
KLADLNDLFTEEFTKDVNNDKLIQASKAGDTAYMYPISSAPFYMALNKKMLKDAGVLDLV
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHCCHHHHH
KEGWTTDDFEKVLKALKDKGYNPGSFFANGQGGDQGPRAFFANLYSSHITDDKVTKYTTD
HCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
DANSIKAMTKISNWIKDGLMMNGSQYDGSADIQNFANGQTSFTILWAPAQPGIQAKLLEA
CHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCEEEECC
SKVDYLEIPFPSDDGKPELEYLVNGFAVFNNKDEQKVAASKTFIQFIADDKEWGPKNVVR
CCCCEEECCCCCCCCCHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHC
TGAFPVRTSYGDLYKDKRMEKIAEWTKFYSPYYNTIDGFAEMRTLWFPMVQAVSNGDEKP
CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EDALKAFTEKANKTIKKTQ
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]