Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is purD
Identifier: 15674274
GI number: 15674274
Start: 46500
End: 47765
Strand: Direct
Name: purD
Synonym: SPy_0032
Alternate gene names: 15674274
Gene position: 46500-47765 (Clockwise)
Preceding gene: 15674272
Following gene: 15674275
Centisome position: 2.51
GC content: 48.74
Gene sequence:
>1266_bases TTGAAATTACTTGTTGTTGGTTCAGGTGGTCGTGAACATGCGATTGCTAAGAAGTTGTTAGCGTCTAAGGGTGTGGATCA GGTTTTTGTGGCACCTGGTAATGATGGTATGACCTTGGATGGTCTGGACTTGGTGAATATAGTAGTTTCCGAACATTCCA GGTTGATTGCCTTTGCTAAGGAGAATGAGATTTCTTGGGCCTTTATTGGTCCTGATGATGCGCTAGCAGCTGGTATCGTT GATGATTTCAACAGTGCTGGACTCAGAGCTTTTGGTCCAACAAAGGCAGCAGCGGAGCTAGAGTGGTCAAAAGACTTTGC CAAGGAAATCATGGTCAAATACAATGTCCCAACAGCAGCCTATGGCACATTTTCAGACTTTGAAAAAGCCAAAGCCTACA TCGAAGAGCAGGGCGCACCTATCGTGGTCAAGGCTGATGGCTTGGCGCTAGGTAAGGGTGTGGTCGTGGCTGAAACCGTT GAGCAGGCGGTAGAGGCGGCGCAAGAGATGCTTCTGGACAATAAGTTTGGCGATTCAGGAGCGCGTGTGGTTATCGAGGA ATTCTTGGATGGCGAGGAGTTTTCCCTCTTTGCCTTTGCTAATGGCGATAAGTTCTACATCATGCCGACAGCTCAGGATC ACAAGCGTGCCTTTGACGGAGACAAGGGGCCAAACACTGGTGGTATGGGTGCCTATGCGCCAGTTCCTCATCTACCTCAG AGCGTGGTAGACACAGCGGTTGAGATGATCGTTAGGCCTGTCCTTGAGGGCATGGTTGCCGAAGGGCGTCCTTATCTAGG TGTCCTCTATGTGGGGCTTATCCTGACAGCTGATGGACCTAAGGTTATCGAGTTCAACTCACGTTTCGGTGACCCTGAAA CTCAGATTATCCTCCCTCGCCTGACTTCTGATTTCGCTCAGAATATTGACGATATCATGATGGGCATTGAGCCTTACATC ACTTGGCAGAAGGACGGTGTGACTTTGGGTGTTGTCGTTGCCTCAGAAGGCTATCCATTCGATTATGAGAAAGGTGTGCC ACTGCCTGAAAAGACCGACGGCGATATCATCACCTACTACGCAGGAGTTAAGTTTTCGGAAAATAGCGAGCTACTTCTCT CAAACGGAGGACGTGTCTATATGCTCGTCACCACAGAAGACAGCGTCAAAGCAGGGCAGGACAAAATCTATACCCAACTG GCCCAACAAGACACAACAGGTCTCTTCTACCGAAATGATATCGGAAGCAAAGCTATAAGAGAATAA
Upstream 100 bases:
>100_bases CATTTTTACAATGTTTCAATTATTGATAACTAATACATTATGTAAAAAAGCGAACGTTTATGATATAATATCTAATTATA ATACGAAAGAGGTGGATGTT
Downstream 100 bases:
>100_bases GACTAACCATTCAAATATTAGCGTCAGCAATCAGCGACCGAAGGTCGCTCCAAAAAGAAAGAAGAAAGGAACTGAACACG GGACTAATTTCCCAGGAAAA
Product: phosphoribosylamine--glycine ligase
Products: NA
Alternate protein names: GARS; Glycinamide ribonucleotide synthetase; Phosphoribosylglycinamide synthetase
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKLLVVGSGGREHAIAKKLLASKGVDQVFVAPGNDGMTLDGLDLVNIVVSEHSRLIAFAKENEISWAFIGPDDALAAGIV DDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETV EQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQ SVVDTAVEMIVRPVLEGMVAEGRPYLGVLYVGLILTADGPKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIMMGIEPYI TWQKDGVTLGVVVASEGYPFDYEKGVPLPEKTDGDIITYYAGVKFSENSELLLSNGGRVYMLVTTEDSVKAGQDKIYTQL AQQDTTGLFYRNDIGSKAIRE
Sequences:
>Translated_421_residues MKLLVVGSGGREHAIAKKLLASKGVDQVFVAPGNDGMTLDGLDLVNIVVSEHSRLIAFAKENEISWAFIGPDDALAAGIV DDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETV EQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQ SVVDTAVEMIVRPVLEGMVAEGRPYLGVLYVGLILTADGPKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIMMGIEPYI TWQKDGVTLGVVVASEGYPFDYEKGVPLPEKTDGDIITYYAGVKFSENSELLLSNGGRVYMLVTTEDSVKAGQDKIYTQL AQQDTTGLFYRNDIGSKAIRE >Mature_421_residues MKLLVVGSGGREHAIAKKLLASKGVDQVFVAPGNDGMTLDGLDLVNIVVSEHSRLIAFAKENEISWAFIGPDDALAAGIV DDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAAYGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETV EQAVEAAQEMLLDNKFGDSGARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQ SVVDTAVEMIVRPVLEGMVAEGRPYLGVLYVGLILTADGPKVIEFNSRFGDPETQIILPRLTSDFAQNIDDIMMGIEPYI TWQKDGVTLGVVVASEGYPFDYEKGVPLPEKTDGDIITYYAGVKFSENSELLLSNGGRVYMLVTTEDSVKAGQDKIYTQL AQQDTTGLFYRNDIGSKAIRE
Specific function: De novo purine biosynthesis; second step. [C]
COG id: COG0151
COG function: function code F; Phosphoribosylamine-glycine ligase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain
Homologues:
Organism=Homo sapiens, GI4503915, Length=425, Percent_Identity=43.0588235294118, Blast_Score=349, Evalue=3e-96, Organism=Homo sapiens, GI209869995, Length=425, Percent_Identity=43.0588235294118, Blast_Score=349, Evalue=3e-96, Organism=Homo sapiens, GI209869993, Length=425, Percent_Identity=43.0588235294118, Blast_Score=349, Evalue=3e-96, Organism=Homo sapiens, GI28416899, Length=425, Percent_Identity=43.0588235294118, Blast_Score=349, Evalue=3e-96, Organism=Escherichia coli, GI1790438, Length=427, Percent_Identity=45.6674473067916, Blast_Score=355, Evalue=4e-99, Organism=Caenorhabditis elegans, GI17567511, Length=425, Percent_Identity=37.6470588235294, Blast_Score=245, Evalue=3e-65, Organism=Saccharomyces cerevisiae, GI6321203, Length=447, Percent_Identity=38.7024608501119, Blast_Score=302, Evalue=8e-83, Organism=Drosophila melanogaster, GI62471619, Length=432, Percent_Identity=42.5925925925926, Blast_Score=304, Evalue=7e-83, Organism=Drosophila melanogaster, GI24582400, Length=432, Percent_Identity=42.5925925925926, Blast_Score=304, Evalue=9e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PUR2_STRP1 (Q9A1Y7)
Other databases:
- EMBL: AE004092 - EMBL: CP000017 - RefSeq: NP_268447.1 - RefSeq: YP_281393.1 - ProteinModelPortal: Q9A1Y7 - SMR: Q9A1Y7 - EnsemblBacteria: EBSTRT00000001431 - EnsemblBacteria: EBSTRT00000027444 - GeneID: 3572913 - GeneID: 900390 - GenomeReviews: AE004092_GR - GenomeReviews: CP000017_GR - KEGG: spy:SPy_0032 - KEGG: spz:M5005_Spy_0029 - GeneTree: EBGT00050000027598 - HOGENOM: HBG404060 - OMA: GVPIVIK - ProtClustDB: PRK00885 - BioCyc: SPYO160490:SPY0032-MONOMER - BioCyc: SPYO293653:M5005_SPY0029-MONOMER - HAMAP: MF_00138 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR020561 - InterPro: IPR000115 - InterPro: IPR020560 - InterPro: IPR020559 - InterPro: IPR020562 - InterPro: IPR011054 - Gene3D: G3DSA:3.30.1490.20 - Gene3D: G3DSA:3.30.470.20 - Gene3D: G3DSA:3.90.600.10 - Gene3D: G3DSA:3.40.50.20 - TIGRFAMs: TIGR00877
Pfam domain/function: PF01071 GARS_A; PF02843 GARS_C; PF02844 GARS_N; SSF52440 PreATP-grasp-like; SSF51246 Rudmnt_hyb_motif
EC number: =6.3.4.13
Molecular weight: Translated: 45481; Mature: 45481
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: PS50975 ATP_GRASP; PS00184 GARS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLVVGSGGREHAIAKKLLASKGVDQVFVAPGNDGMTLDGLDLVNIVVSEHSRLIAFAK CEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHCCCEEEEEEE ENEISWAFIGPDDALAAGIVDDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAA CCCEEEEEECCCHHHHHHHHHCCCCCCCEECCCCCCHHCCHHHHHHHHHEEEEECCCCCC YGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAQEMLLDNKFGDSG CCCHHHHHHHHHHHHHCCCEEEEEECCEEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCC ARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQ HHHHHHHHCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH SVVDTAVEMIVRPVLEGMVAEGRPYLGVLYVGLILTADGPKVIEFNSRFGDPETQIILPR HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECCCCEEEEECCCCCCCCCEEEEHH LTSDFAQNIDDIMMGIEPYITWQKDGVTLGVVVASEGYPFDYEKGVPLPEKTDGDIITYY HHHHHHHCHHHHHHCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE AGVKFSENSELLLSNGGRVYMLVTTEDSVKAGQDKIYTQLAQQDTTGLFYRNDIGSKAIR ECEEECCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHC E C >Mature Secondary Structure MKLLVVGSGGREHAIAKKLLASKGVDQVFVAPGNDGMTLDGLDLVNIVVSEHSRLIAFAK CEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEECCHHHHHHHHHCCCEEEEEEE ENEISWAFIGPDDALAAGIVDDFNSAGLRAFGPTKAAAELEWSKDFAKEIMVKYNVPTAA CCCEEEEEECCCHHHHHHHHHCCCCCCCEECCCCCCHHCCHHHHHHHHHEEEEECCCCCC YGTFSDFEKAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAQEMLLDNKFGDSG CCCHHHHHHHHHHHHHCCCEEEEEECCEEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCC ARVVIEEFLDGEEFSLFAFANGDKFYIMPTAQDHKRAFDGDKGPNTGGMGAYAPVPHLPQ HHHHHHHHCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCH SVVDTAVEMIVRPVLEGMVAEGRPYLGVLYVGLILTADGPKVIEFNSRFGDPETQIILPR HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECCCCEEEEECCCCCCCCCEEEEHH LTSDFAQNIDDIMMGIEPYITWQKDGVTLGVVVASEGYPFDYEKGVPLPEKTDGDIITYY HHHHHHHCHHHHHHCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE AGVKFSENSELLLSNGGRVYMLVTTEDSVKAGQDKIYTQLAQQDTTGLFYRNDIGSKAIR ECEEECCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11296296