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The map label for this gene is yagA [C]

Identifier: 13474963

GI number: 13474963

Start: 4811913

End: 4812449

Strand: Direct

Name: yagA [C]

Synonym: mlr5952

Alternate gene names: 13474963

Gene position: 4811913-4812449 (Clockwise)

Preceding gene: 13474951

Following gene: 13474965

Centisome position: 68.39

GC content: 61.82

Gene sequence:

>537_bases
GTGAAGGCGAAGCTACGAGATGATCGTCAGCCGGCCGTCGAGCCCAACGACGTGTGGGCGCTGGACTTCGTTCACGACCA
GCTCGCGACCGGCAAGAAGATCCGCGTGCTGACGGTCGTCGATACGTTCTCGCGCTACGTGCCGGTGCTCGACCCGCGCT
TCAGTTACCGAGCAGAGGACGGGGTCAGGACGCTGGAACAAGTCTGTCCTCGGATCGGCTATCCGAAGACGATCAGGGTC
GATCAGGGCACGGAGTTCGTGTCCCGCGACCTCGATCTGTGGGCCTACACCAAGGGCGTTACGCTCGACTTCTCGCGCCC
GGGAAAGCCAACCGACAACGCCTACATCGAAGCTTTCAACGGCCGCTTCAGGGCGGAGTGCCTGAATGCCCACTGGTTCC
TGACGCTTGCCGACGCGGCCAAAAAGTTGGAGGATTGGCGCAGATACTACAACGAGGTGCGCCCACATGGTGCAATCGGA
CACAAGGTCCCGATCTCGTTGATCAATCCCGATGGCGCCACCAGCCCGCCATCGTGA

Upstream 100 bases:

>100_bases
GTAAGCCGACGGGTGATTGCTTTCCAGCGTCTCAATCATCCAGCGTTTATGAGTTCACGACCTAGGGCTTCAACTGCGGA
ACAAGACGCCGAAACGGCGC

Downstream 100 bases:

>100_bases
AGCAGCCGGGAAACTCCACCTTCCGGCGGTCCAAAGAACGGTATCGGATCAGAAACGGCCAAGGCTCTAATCGCCGCTGG
ATGAATGTTCAGTGGCAGGT

Product: transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKAKLRDDRQPAVEPNDVWALDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAEDGVRTLEQVCPRIGYPKTIRV
DQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADAAKKLEDWRRYYNEVRPHGAIG
HKVPISLINPDGATSPPS

Sequences:

>Translated_178_residues
MKAKLRDDRQPAVEPNDVWALDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAEDGVRTLEQVCPRIGYPKTIRV
DQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADAAKKLEDWRRYYNEVRPHGAIG
HKVPISLINPDGATSPPS
>Mature_178_residues
MKAKLRDDRQPAVEPNDVWALDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAEDGVRTLEQVCPRIGYPKTIRV
DQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADAAKKLEDWRRYYNEVRPHGAIG
HKVPISLINPDGATSPPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=173, Percent_Identity=30.635838150289, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 20305; Mature: 20305

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKLRDDRQPAVEPNDVWALDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAED
CCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHH
GVRTLEQVCPRIGYPKTIRVDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFN
HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCEEEEECCCEEECCCCCCCCCCCEEEECC
GRFRAECLNAHWFLTLADAAKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS
CCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MKAKLRDDRQPAVEPNDVWALDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAED
CCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHH
GVRTLEQVCPRIGYPKTIRVDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFN
HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCEEEEECCCEEECCCCCCCCCCCEEEECC
GRFRAECLNAHWFLTLADAAKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS
CCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]