| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is oppD [H]
Identifier: 13474909
GI number: 13474909
Start: 4763743
End: 4764774
Strand: Direct
Name: oppD [H]
Synonym: mlr5893
Alternate gene names: 13474909
Gene position: 4763743-4764774 (Clockwise)
Preceding gene: 13474908
Following gene: 13474910
Centisome position: 67.7
GC content: 66.18
Gene sequence:
>1032_bases ATGCTGCACAAGTCCTTCCAGAACAGCGCGGGCGCCGCGCTGTTGCCGGCCCATGACATCGGGGCTTCCGCCACCAAACC TGCCATAAGCATTGCTGGCTTGAGGGTGGCGTTCGGCGATGTGCCTGTGCTGCACGGTGTCGATCTCGCTGTGAACAAAG GCGAGGCCTTGGGTATCGTTGGCGAATCCGGCTGCGGCAAGTCCGTGACTTGGCGGGCGGTTCTTGGCCTGCTGCCGAAA TCCGCCGAGATCGGGGGCGAGGCCAGGATTGGTGATCTCGATCTTGTGGGCGCACGACAATCCGTTTTGGATCGGGTGCG CGGCGGACGCATCGCCATGATCTTCCAGGATCCGGCCAGCGCGCTGAACCCGGTGCATCGCATCGGCGCGCAGATCACCG AAGCGCTTCGCCTGCACCGTGGCCTCAGCGGTGCCGCCGCCCGTGCCCAGGCCTGCCGCCTGCTCGACCAGGTCGGGATA GCCGCTGCGGCAAGCAGGCTCAACGCGTACCCCCACGAACTGTCGGGCGGCCAGAACCAGCGGGTGATGATTGCCATCGC GCTCGCCGGCCGGCCCGAACTGCTGATCGCCGATGAGCCAACGACCGCGCTCGACGCTACCGTGCAGGCGCAGATCCTGC TGCTGCTCAAAGATATTCAACGCGACACAGGCATGGCGCTGGTCATGATCAGCCATGATCTCGCCGCGGTGGCTGCCGTC TGTGACCGGGCATGCGTCATGTATGCGGGCCAGATCGTCGAAACGGCACCGAAACACACGCTTCTGACCGCGCCGGAGCA CCCCTATACACGCGACCTGATCGGTGCCATTCCGCCCTCGCACGGTCCGCGCATGCGGTTGACCGCCATTGCCGGCGCGC CGCCACAACGCAATCTGCCGCCGGGATGCGCCTATGCGCCACGCTGCCGGCACGCGATCGCGGTATGTCGCACGAGCCGA CCGGAACCGCGGCAGGTCGCCGCGCGGCATTCGGTGCGTTGCCTTCGTTTGGACGCCGGCACGTATCAATGA
Upstream 100 bases:
>100_bases TCATCTATGGGCAGAAGGCGGATGTCAGCTGGCAGCCCAACCCGTTACCGCAAATGTATCTCGGCCCGAAGATGCCGCCT GAGCCGGTGGCCTGAGTTCC
Downstream 100 bases:
>100_bases CCCTGCTGCGTCTCAACAACCTCACCCGTCGCTTTCCGCTCGGCTCGCCACTCTACGGACCGCGGAAATATCTTGTAGCA GTCGATGGCGTGTCGCTGGA
Product: ATP-binding component of ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MLHKSFQNSAGAALLPAHDIGASATKPAISIAGLRVAFGDVPVLHGVDLAVNKGEALGIVGESGCGKSVTWRAVLGLLPK SAEIGGEARIGDLDLVGARQSVLDRVRGGRIAMIFQDPASALNPVHRIGAQITEALRLHRGLSGAAARAQACRLLDQVGI AAAASRLNAYPHELSGGQNQRVMIAIALAGRPELLIADEPTTALDATVQAQILLLLKDIQRDTGMALVMISHDLAAVAAV CDRACVMYAGQIVETAPKHTLLTAPEHPYTRDLIGAIPPSHGPRMRLTAIAGAPPQRNLPPGCAYAPRCRHAIAVCRTSR PEPRQVAARHSVRCLRLDAGTYQ
Sequences:
>Translated_343_residues MLHKSFQNSAGAALLPAHDIGASATKPAISIAGLRVAFGDVPVLHGVDLAVNKGEALGIVGESGCGKSVTWRAVLGLLPK SAEIGGEARIGDLDLVGARQSVLDRVRGGRIAMIFQDPASALNPVHRIGAQITEALRLHRGLSGAAARAQACRLLDQVGI AAAASRLNAYPHELSGGQNQRVMIAIALAGRPELLIADEPTTALDATVQAQILLLLKDIQRDTGMALVMISHDLAAVAAV CDRACVMYAGQIVETAPKHTLLTAPEHPYTRDLIGAIPPSHGPRMRLTAIAGAPPQRNLPPGCAYAPRCRHAIAVCRTSR PEPRQVAARHSVRCLRLDAGTYQ >Mature_343_residues MLHKSFQNSAGAALLPAHDIGASATKPAISIAGLRVAFGDVPVLHGVDLAVNKGEALGIVGESGCGKSVTWRAVLGLLPK SAEIGGEARIGDLDLVGARQSVLDRVRGGRIAMIFQDPASALNPVHRIGAQITEALRLHRGLSGAAARAQACRLLDQVGI AAAASRLNAYPHELSGGQNQRVMIAIALAGRPELLIADEPTTALDATVQAQILLLLKDIQRDTGMALVMISHDLAAVAAV CDRACVMYAGQIVETAPKHTLLTAPEHPYTRDLIGAIPPSHGPRMRLTAIAGAPPQRNLPPGCAYAPRCRHAIAVCRTSR PEPRQVAARHSVRCLRLDAGTYQ
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=206, Percent_Identity=27.1844660194175, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI6005701, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI255708477, Length=239, Percent_Identity=27.6150627615063, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI116734710, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI153792144, Length=209, Percent_Identity=24.4019138755981, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI148612844, Length=239, Percent_Identity=28.8702928870293, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=26.8085106382979, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI48994883, Length=298, Percent_Identity=44.6308724832215, Blast_Score=270, Evalue=7e-74, Organism=Escherichia coli, GI1789963, Length=312, Percent_Identity=44.2307692307692, Blast_Score=256, Evalue=2e-69, Organism=Escherichia coli, GI1787759, Length=301, Percent_Identity=45.514950166113, Blast_Score=246, Evalue=1e-66, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=46.9230769230769, Blast_Score=224, Evalue=7e-60, Organism=Escherichia coli, GI145693107, Length=286, Percent_Identity=42.6573426573427, Blast_Score=220, Evalue=1e-58, Organism=Escherichia coli, GI1787500, Length=298, Percent_Identity=41.9463087248322, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1787548, Length=321, Percent_Identity=37.0716510903427, Blast_Score=194, Evalue=5e-51, Organism=Escherichia coli, GI1789962, Length=284, Percent_Identity=36.6197183098592, Blast_Score=188, Evalue=4e-49, Organism=Escherichia coli, GI1787758, Length=299, Percent_Identity=41.1371237458194, Blast_Score=187, Evalue=6e-49, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=39.4067796610169, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1788225, Length=251, Percent_Identity=35.0597609561753, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787547, Length=228, Percent_Identity=32.0175438596491, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1789891, Length=250, Percent_Identity=36, Blast_Score=122, Evalue=5e-29, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=32.2834645669291, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1786703, Length=224, Percent_Identity=36.6071428571429, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=31.2741312741313, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1786398, Length=251, Percent_Identity=32.2709163346614, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=33.0612244897959, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788761, Length=252, Percent_Identity=30.1587301587302, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1790162, Length=250, Percent_Identity=29.2, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=32.1888412017167, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786872, Length=249, Percent_Identity=32.1285140562249, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787712, Length=252, Percent_Identity=29.3650793650794, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=32.7510917030568, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786563, Length=231, Percent_Identity=30.7359307359307, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=251, Percent_Identity=29.4820717131474, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1790467, Length=273, Percent_Identity=26.7399267399267, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=27.6, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=266, Percent_Identity=30.8270676691729, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=33.6170212765957, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788450, Length=249, Percent_Identity=27.3092369477912, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=33.7837837837838, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI87082267, Length=244, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788165, Length=275, Percent_Identity=28.3636363636364, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786319, Length=268, Percent_Identity=27.2388059701493, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081782, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790739, Length=247, Percent_Identity=28.7449392712551, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=29.6803652968037, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=30.1435406698565, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=28.0373831775701, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790525, Length=234, Percent_Identity=29.4871794871795, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=243, Percent_Identity=28.8065843621399, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789586, Length=235, Percent_Identity=27.6595744680851, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790534, Length=207, Percent_Identity=32.8502415458937, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=31.2775330396476, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=26.2910798122066, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1788053, Length=218, Percent_Identity=27.9816513761468, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=24.0506329113924, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786803, Length=233, Percent_Identity=27.0386266094421, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1788897, Length=240, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI25146777, Length=229, Percent_Identity=28.82096069869, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193202349, Length=234, Percent_Identity=29.9145299145299, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=29.3859649122807, Blast_Score=82, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71983523, Length=251, Percent_Identity=25.4980079681275, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71983516, Length=251, Percent_Identity=25.4980079681275, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71983510, Length=251, Percent_Identity=25.4980079681275, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17541710, Length=249, Percent_Identity=29.718875502008, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71984940, Length=252, Percent_Identity=28.968253968254, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=28.8288288288288, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211017, Length=272, Percent_Identity=29.0441176470588, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193211015, Length=272, Percent_Identity=29.0441176470588, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71996809, Length=272, Percent_Identity=29.0441176470588, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=234, Percent_Identity=27.3504273504274, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=251, Percent_Identity=25.4980079681275, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=210, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=216, Percent_Identity=26.8518518518519, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=269, Percent_Identity=26.3940520446097, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076684, Length=245, Percent_Identity=26.1224489795918, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581617, Length=245, Percent_Identity=26.1224489795918, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581615, Length=245, Percent_Identity=26.1224489795918, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI161076682, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17136662, Length=231, Percent_Identity=27.7056277056277, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI19920532, Length=258, Percent_Identity=26.3565891472868, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580930, Length=258, Percent_Identity=26.3565891472868, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=25.7009345794392, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24659289, Length=272, Percent_Identity=26.8382352941176, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24641565, Length=230, Percent_Identity=29.1304347826087, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35981; Mature: 35981
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHKSFQNSAGAALLPAHDIGASATKPAISIAGLRVAFGDVPVLHGVDLAVNKGEALGIV CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCEEEECCCCEEEEE GESGCGKSVTWRAVLGLLPKSAEIGGEARIGDLDLVGARQSVLDRVRGGRIAMIFQDPAS ECCCCCCCHHHHHHHHCCCCCCCCCCCCEECCEEECCCHHHHHHHHCCCEEEEEECCCHH ALNPVHRIGAQITEALRLHRGLSGAAARAQACRLLDQVGIAAAASRLNAYPHELSGGQNQ HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC RVMIAIALAGRPELLIADEPTTALDATVQAQILLLLKDIQRDTGMALVMISHDLAAVAAV EEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH CDRACVMYAGQIVETAPKHTLLTAPEHPYTRDLIGAIPPSHGPRMRLTAIAGAPPQRNLP HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCC PGCAYAPRCRHAIAVCRTSRPEPRQVAARHSVRCLRLDAGTYQ CCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCCCC >Mature Secondary Structure MLHKSFQNSAGAALLPAHDIGASATKPAISIAGLRVAFGDVPVLHGVDLAVNKGEALGIV CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCEEEECCCCEEEEE GESGCGKSVTWRAVLGLLPKSAEIGGEARIGDLDLVGARQSVLDRVRGGRIAMIFQDPAS ECCCCCCCHHHHHHHHCCCCCCCCCCCCEECCEEECCCHHHHHHHHCCCEEEEEECCCHH ALNPVHRIGAQITEALRLHRGLSGAAARAQACRLLDQVGIAAAASRLNAYPHELSGGQNQ HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC RVMIAIALAGRPELLIADEPTTALDATVQAQILLLLKDIQRDTGMALVMISHDLAAVAAV EEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH CDRACVMYAGQIVETAPKHTLLTAPEHPYTRDLIGAIPPSHGPRMRLTAIAGAPPQRNLP HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCC PGCAYAPRCRHAIAVCRTSRPEPRQVAARHSVRCLRLDAGTYQ CCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]