| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
Click here to switch to the map view.
The map label for this gene is glnD
Identifier: 13474440
GI number: 13474440
Start: 4247975
End: 4250776
Strand: Reverse
Name: glnD
Synonym: mll5321
Alternate gene names: 13474440
Gene position: 4250776-4247975 (Counterclockwise)
Preceding gene: 13474441
Following gene: 13474439
Centisome position: 60.41
GC content: 64.63
Gene sequence:
>2802_bases ATGGCGAAAATCTCCCTGAAGCTCGATGAACTGATCGACGGCGAAGCCTTGCGCCGCGAGATGACCGCGCTGACGACGGC CACGGCGGGCGACGGTTCGGGAGCAGCCGCCCGCGCCGGCGTCCTGCAGCTTCTCAAGGCCCGGCTCGCCGAAGGCCGAA AGATTGCCGAGGCCATGCTGAAGGAGGATGGCGGCGGCAATGCCTGCGCCGAGCGATTGTCGCATCTGATGGATGAGCTG ATCCGGGCGCTTTACGATTTCGCCGCGACGCATGTCTACCGGGTGAAAAACCGTTCGTCGGCCGAACGCATGGCCGTCGT GGCGGTCGGCGGCTATGGCCGCGGCACGCTGGCGCCGGGATCCGACATCGATCTTCTGTTCCTGTTGCCCTACAAGCAGA CGCCATGGGGCGAGCAGACCGTCGAATACATGCTCTACATGCTGTGGGATCTCGGCCTGAAGGTCGGCCACGCCACCCGC AACATCGATGAGTGCCTGCGGCTGTCGCGCACCGACATCACCATCCGCACCTCGATCCTGGAAGCGCGCTTCCTGTGGGG CGAACGCAAGCTCTACGACGAGCTGATGCTGCGTTTCGACCATGAGGTGGTGCGCACGACTGGCCCGGAATATGTCCAGG CCAAGCTCGCCGAGCGCGACGAGCGCCATGCCAAGGCCGGCGAGAGCCGCTATCTGGTCGAGCCCAACGTCAAGGACGGC AAGGGCGGCCTGCGCGACCTGCAGACGCTGTTCTGGATCGGCAAATACTTCTACCGGGTGCGCACCGGCGAGGAACTGGT CGAAAAGGGCGTCTTCACCGAGGCCGAGTACCGCGAGTTCCAGAAGGCCGAGGACTTCCTGTGGGCGGTGCGCTGCCACA TGCATTTCCTCACCGGCAAGGCCGAGGAGCGGCTGCATTTCGACATCCAGCGCGAGATCGCAGAGCGGCTCGGCTACACC ACCCATCCCGGCCTGTCGGCGGTCGAACGCTTCATGAAACACTACTTCCTCGTCGCCAAGGATGTCGGCGACCTGACCCG CATCTTTTGCGCGGCGCTCGAGGAGGAACAAGCCAAGCACGTCCCCGGCTTCAATCGCATCTTCCTCACCTTCCAGCGCC GCAAGCGCAAGCTCGCCGGCACCTCCGACTTCATTGTCGACAACCACCGCATCAACATCGCCGACGACCAGGTGTTCGAG CGCGATCCGGTCAATTTGCTCAGGCTGTTCTGGTTCGCCGACAAGCACGGGCTGGAATTCCACCCCGATGCGCTGAAGCT GCTCACCCGCTCGCTCGGCCTGGTCAACAAATCGCTGCGGCGCGACGAAGAGGCCAACCGGCTGTTCCTCGACATATTGA CCTCGGACCGCAATGCCGAACTCAATCTGCGACGGATGAACGAGGCCGGGCTTCTGGGCAGGCTGATCCCCGACTTCGGC AAGATCGTCGCCATGATGCAGTTCTCGATGTACCACCACTACACGGTCGACGAGCACCTGATCCGCTGCATCGGCGTGCT GGCCGAGATCGAGCGCGGCGATGGCGAGAAGGTGCATCCGCTGTCGCATTCGCTGATGCCCGGCCTGAAGAAGAGCCGCG AGGCGCTCTATGTCGCCGTCTTGCTGCACGACATCGCCAAGGGCAGGCCGGAAGACCATTCCGAGGCCGGCGCCCGCATC GCGCGGCGCATCTGCCCGCATATGGGGCTGTCGGCGGCGGACACGGAAACCGTCGCCTGGCTGGTCGAGAACCACCTCGC CATGTCGATGACGGCGCAGACGCGCGACCTCAACGACCGCAAGACCATCGAGGATTTCGCCTCGATCGTGCAGTCGGTCG AGCGGCTGAAGCTCTTGTTGGTCCTCACCGTCTGCGACATCAGGGGCGTCGGGCCAGGGGTGTGGAACGGCTGGAAGGGC CAGTTGCTGCGCACGCTCTATTACGAGACCGAGTTGCTCCTGACCGGCGGTTTCTCGGAAGTGTCGCGCGCCCAGCGCAC GGCGGCGGCGCGCGAACGTCTGGCCGAGGCGCTCGCCGACTGGCCCGACAAAGACCGCAAGCGCTATGTCGGGCTGCATT ATGAGAACTACCTGCTGACCGTCGACCTGCCGGATCAGCTGCGCCACGCCGAATTCGTCCGCGAGGCCGACGCAGCCGGC AAGAAGCTCGCCACCATGGTCAAGACCCACCAGTTCGAGGCGGTGACCGAAATCACCGTTCTGGCGCAGGACCATCCCCG TCTTCTCTCGGTCATTGCAGGGGCATGCGTCGGCGCCGGCGGCAATATCGTCGACGCGCAGATCTTCACCACCGCCGACG GCCGCGCGCTCGACACCATCCTGATTTCGCGGGAATTCGACCGTGACGAGGACGAACGCCGCCGCGCCGAGCGCGTCGGC CGGCTGATCGAGGATGTGCTGTCGGGCAAGAGCTGGCTGCCGGAGATGATCGAGAAGCGCACCAAGCCAAAACGCGGCGC CAAAGTGTTCAAGATCCCGCCACGCGCCGAAATCCGCAACACGCTGTCAAACCGGTTTTCGGTCATCGAGGTCGAGGGGC TCGACCGCCCGGGCCTGCTGTCGGAGATCACCGGCACGCTGTCCGACCTGTCGCTCGACATCGCCTCGGCGCACATCACC ACTTTCGGTGAAAAGGTCATCGACACCTTCTATGTCACAGACCTCACCGGCCAGAAGATCGATAGCCCGGCCCGCATCGC CACCATCCGCAACCGGCTGATGGCAACGCTCGAAGGCATCGCGCCCGAACGCGGCGGCAAGGCCAAGGCGGCCGCCGAGT GA
Upstream 100 bases:
>100_bases AAAGGACTAGGCCGCTTGCCGGGCCGCCAGCAGGCCCCATACCCAGCGCCGCGAAAACACGCTATAGACGCCGCCCAAAT GGCAAGGCCGACTGATACTT
Downstream 100 bases:
>100_bases CTGCCATCCTCACCTTGTCCCACTCCCACAGGCAGTCTTCGAACGCATGAGCCTCGTCAAGAAATTCGCTACCGTCGCTT CCGGCACGCTGATGAGCCGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme
Number of amino acids: Translated: 933; Mature: 932
Protein sequence:
>933_residues MAKISLKLDELIDGEALRREMTALTTATAGDGSGAAARAGVLQLLKARLAEGRKIAEAMLKEDGGGNACAERLSHLMDEL IRALYDFAATHVYRVKNRSSAERMAVVAVGGYGRGTLAPGSDIDLLFLLPYKQTPWGEQTVEYMLYMLWDLGLKVGHATR NIDECLRLSRTDITIRTSILEARFLWGERKLYDELMLRFDHEVVRTTGPEYVQAKLAERDERHAKAGESRYLVEPNVKDG KGGLRDLQTLFWIGKYFYRVRTGEELVEKGVFTEAEYREFQKAEDFLWAVRCHMHFLTGKAEERLHFDIQREIAERLGYT THPGLSAVERFMKHYFLVAKDVGDLTRIFCAALEEEQAKHVPGFNRIFLTFQRRKRKLAGTSDFIVDNHRINIADDQVFE RDPVNLLRLFWFADKHGLEFHPDALKLLTRSLGLVNKSLRRDEEANRLFLDILTSDRNAELNLRRMNEAGLLGRLIPDFG KIVAMMQFSMYHHYTVDEHLIRCIGVLAEIERGDGEKVHPLSHSLMPGLKKSREALYVAVLLHDIAKGRPEDHSEAGARI ARRICPHMGLSAADTETVAWLVENHLAMSMTAQTRDLNDRKTIEDFASIVQSVERLKLLLVLTVCDIRGVGPGVWNGWKG QLLRTLYYETELLLTGGFSEVSRAQRTAAARERLAEALADWPDKDRKRYVGLHYENYLLTVDLPDQLRHAEFVREADAAG KKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILISREFDRDEDERRRAERVG RLIEDVLSGKSWLPEMIEKRTKPKRGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHIT TFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGKAKAAAE
Sequences:
>Translated_933_residues MAKISLKLDELIDGEALRREMTALTTATAGDGSGAAARAGVLQLLKARLAEGRKIAEAMLKEDGGGNACAERLSHLMDEL IRALYDFAATHVYRVKNRSSAERMAVVAVGGYGRGTLAPGSDIDLLFLLPYKQTPWGEQTVEYMLYMLWDLGLKVGHATR NIDECLRLSRTDITIRTSILEARFLWGERKLYDELMLRFDHEVVRTTGPEYVQAKLAERDERHAKAGESRYLVEPNVKDG KGGLRDLQTLFWIGKYFYRVRTGEELVEKGVFTEAEYREFQKAEDFLWAVRCHMHFLTGKAEERLHFDIQREIAERLGYT THPGLSAVERFMKHYFLVAKDVGDLTRIFCAALEEEQAKHVPGFNRIFLTFQRRKRKLAGTSDFIVDNHRINIADDQVFE RDPVNLLRLFWFADKHGLEFHPDALKLLTRSLGLVNKSLRRDEEANRLFLDILTSDRNAELNLRRMNEAGLLGRLIPDFG KIVAMMQFSMYHHYTVDEHLIRCIGVLAEIERGDGEKVHPLSHSLMPGLKKSREALYVAVLLHDIAKGRPEDHSEAGARI ARRICPHMGLSAADTETVAWLVENHLAMSMTAQTRDLNDRKTIEDFASIVQSVERLKLLLVLTVCDIRGVGPGVWNGWKG QLLRTLYYETELLLTGGFSEVSRAQRTAAARERLAEALADWPDKDRKRYVGLHYENYLLTVDLPDQLRHAEFVREADAAG KKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILISREFDRDEDERRRAERVG RLIEDVLSGKSWLPEMIEKRTKPKRGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHIT TFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGKAKAAAE >Mature_932_residues AKISLKLDELIDGEALRREMTALTTATAGDGSGAAARAGVLQLLKARLAEGRKIAEAMLKEDGGGNACAERLSHLMDELI RALYDFAATHVYRVKNRSSAERMAVVAVGGYGRGTLAPGSDIDLLFLLPYKQTPWGEQTVEYMLYMLWDLGLKVGHATRN IDECLRLSRTDITIRTSILEARFLWGERKLYDELMLRFDHEVVRTTGPEYVQAKLAERDERHAKAGESRYLVEPNVKDGK GGLRDLQTLFWIGKYFYRVRTGEELVEKGVFTEAEYREFQKAEDFLWAVRCHMHFLTGKAEERLHFDIQREIAERLGYTT HPGLSAVERFMKHYFLVAKDVGDLTRIFCAALEEEQAKHVPGFNRIFLTFQRRKRKLAGTSDFIVDNHRINIADDQVFER DPVNLLRLFWFADKHGLEFHPDALKLLTRSLGLVNKSLRRDEEANRLFLDILTSDRNAELNLRRMNEAGLLGRLIPDFGK IVAMMQFSMYHHYTVDEHLIRCIGVLAEIERGDGEKVHPLSHSLMPGLKKSREALYVAVLLHDIAKGRPEDHSEAGARIA RRICPHMGLSAADTETVAWLVENHLAMSMTAQTRDLNDRKTIEDFASIVQSVERLKLLLVLTVCDIRGVGPGVWNGWKGQ LLRTLYYETELLLTGGFSEVSRAQRTAAARERLAEALADWPDKDRKRYVGLHYENYLLTVDLPDQLRHAEFVREADAAGK KLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILISREFDRDEDERRRAERVGR LIEDVLSGKSWLPEMIEKRTKPKRGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITT FGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGKAKAAAE
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family
Homologues:
Organism=Escherichia coli, GI1786363, Length=800, Percent_Identity=33.375, Blast_Score=391, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLND_RHILO (Q98C27)
Other databases:
- EMBL: BA000012 - RefSeq: NP_106008.1 - ProteinModelPortal: Q98C27 - GeneID: 1228669 - GenomeReviews: BA000012_GR - KEGG: mlo:mll5321 - NMPDR: fig|266835.1.peg.4112 - HOGENOM: HBG687872 - OMA: MQHDLFH - ProtClustDB: PRK05092 - BRENDA: 2.7.7.59 - HAMAP: MF_00277 - InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 - PANTHER: PTHR13734:SF1 - PIRSF: PIRSF006288 - SMART: SM00471 - TIGRFAMs: TIGR01693
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2
EC number: =2.7.7.59
Molecular weight: Translated: 105281; Mature: 105150
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKISLKLDELIDGEALRREMTALTTATAGDGSGAAARAGVLQLLKARLAEGRKIAEAML CCEEEEEHHHHHCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH KEDGGGNACAERLSHLMDELIRALYDFAATHVYRVKNRSSAERMAVVAVGGYGRGTLAPG HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC SDIDLLFLLPYKQTPWGEQTVEYMLYMLWDLGLKVGHATRNIDECLRLSRTDITIRTSIL CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHCCCCCEEEHHHHH EARFLWGERKLYDELMLRFDHEVVRTTGPEYVQAKLAERDERHAKAGESRYLVEPNVKDG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC KGGLRDLQTLFWIGKYFYRVRTGEELVEKGVFTEAEYREFQKAEDFLWAVRCHMHFLTGK CCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AEERLHFDIQREIAERLGYTTHPGLSAVERFMKHYFLVAKDVGDLTRIFCAALEEEQAKH CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VPGFNRIFLTFQRRKRKLAGTSDFIVDNHRINIADDQVFERDPVNLLRLFWFADKHGLEF CCCCHHHHEEHHHHHHHHCCCCCEEEECCEEEECCCCHHCCCHHHHHHHHHHHCCCCCCC HPDALKLLTRSLGLVNKSLRRDEEANRLFLDILTSDRNAELNLRRMNEAGLLGRLIPDFG CHHHHHHHHHHHHHHHHHHHCCHHHCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHH KIVAMMQFSMYHHYTVDEHLIRCIGVLAEIERGDGEKVHPLSHSLMPGLKKSREALYVAV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHCCCHHHHHHHHHHHH LLHDIAKGRPEDHSEAGARIARRICPHMGLSAADTETVAWLVENHLAMSMTAQTRDLNDR HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEHHHCCCCCH KTIEDFASIVQSVERLKLLLVLTVCDIRGVGPGVWNGWKGQLLRTLYYETELLLTGGFSE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHH VSRAQRTAAARERLAEALADWPDKDRKRYVGLHYENYLLTVDLPDQLRHAEFVREADAAG HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEEEEEECHHHHHHHHHHHHHHHHH KKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTI HHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHH LISREFDRDEDERRRAERVGRLIEDVLSGKSWLPEMIEKRTKPKRGAKVFKIPPRAEIRN HEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHH TLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKI HHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC DSPARIATIRNRLMATLEGIAPERGGKAKAAAE CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure AKISLKLDELIDGEALRREMTALTTATAGDGSGAAARAGVLQLLKARLAEGRKIAEAML CEEEEEHHHHHCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH KEDGGGNACAERLSHLMDELIRALYDFAATHVYRVKNRSSAERMAVVAVGGYGRGTLAPG HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC SDIDLLFLLPYKQTPWGEQTVEYMLYMLWDLGLKVGHATRNIDECLRLSRTDITIRTSIL CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHCCCCCEEEHHHHH EARFLWGERKLYDELMLRFDHEVVRTTGPEYVQAKLAERDERHAKAGESRYLVEPNVKDG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC KGGLRDLQTLFWIGKYFYRVRTGEELVEKGVFTEAEYREFQKAEDFLWAVRCHMHFLTGK CCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AEERLHFDIQREIAERLGYTTHPGLSAVERFMKHYFLVAKDVGDLTRIFCAALEEEQAKH CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VPGFNRIFLTFQRRKRKLAGTSDFIVDNHRINIADDQVFERDPVNLLRLFWFADKHGLEF CCCCHHHHEEHHHHHHHHCCCCCEEEECCEEEECCCCHHCCCHHHHHHHHHHHCCCCCCC HPDALKLLTRSLGLVNKSLRRDEEANRLFLDILTSDRNAELNLRRMNEAGLLGRLIPDFG CHHHHHHHHHHHHHHHHHHHCCHHHCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHH KIVAMMQFSMYHHYTVDEHLIRCIGVLAEIERGDGEKVHPLSHSLMPGLKKSREALYVAV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHCCCHHHHHHHHHHHH LLHDIAKGRPEDHSEAGARIARRICPHMGLSAADTETVAWLVENHLAMSMTAQTRDLNDR HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEHHHCCCCCH KTIEDFASIVQSVERLKLLLVLTVCDIRGVGPGVWNGWKGQLLRTLYYETELLLTGGFSE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHH VSRAQRTAAARERLAEALADWPDKDRKRYVGLHYENYLLTVDLPDQLRHAEFVREADAAG HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEEEEEECHHHHHHHHHHHHHHHHH KKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTI HHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHH LISREFDRDEDERRRAERVGRLIEDVLSGKSWLPEMIEKRTKPKRGAKVFKIPPRAEIRN HEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHH TLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKI HHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC DSPARIATIRNRLMATLEGIAPERGGKAKAAAE CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968