Click here to switch to the map view.

The map label for this gene is lpsA [H]

Identifier: 13474441

GI number: 13474441

Start: 4250867

End: 4251664

Strand: Reverse

Name: lpsA [H]

Synonym: mll5323

Alternate gene names: 13474441

Gene position: 4251664-4250867 (Counterclockwise)

Preceding gene: 13474442

Following gene: 13474440

Centisome position: 60.43

GC content: 61.65

Gene sequence:

>798_bases
ATGAAGCGTCTGGTCATCAACCTCGATCGATCTCCCGAGCGGCTTGCCCACATGTCGAAGGAATTCGCCCGCATCGGCAT
TGGGTTCGAGCGGGTCGCGGGGGTCGATGGCAAGGAACATCCCGACCTGATGCTGCAGCCGCAGCACGCGATACACGCCA
CCCGGCCGCTCTCCGGCAGTGAAATCGCCTGCCTGCACAGTCATCGAGCCTGCTGGACGATCATTGCGCAGGATGAGGCC
CCATACGGCGCGGTTTTCGAGGACGACATGGTCTTCTCCAGCAAGGCCGGGGCGTTGCTGGGCGATACGAGTTGGGTGCC
GGCGGACGCCGATGTCGTGAAGCTCGAAACGTTCTTCTCCAGAACCGTGATCCAGAGGAGAAGGATCTCTGCCGGGCATG
GTTTTTCCATGTTCCGGCTCCGCAAGGGCCATCCGGGAGCTGGCGGTTATCTGCTCTCGCGGCGAACGGCACGCGACTTT
CTGGAGGCAACGGCGCAGGTCAACATTGCTGTCGATGATCTCATCTTCGACCCCATCATATCGGCCGGCAAGACTATCTA
CCAACTTGTCCCGGCGCTCTGCGCACAGGATCAATTCGTCGGCGGAAGGCTGCCAAGCCTGCTCGACCAGGAACGCGATG
CCGCGCGGACCGCGAGCGGGCTTATGACAAGGCAGAAGAAGCCAATGGCCGTGAGAATCAGTAGGGAGGCCGGGCGGACC
GCACGGTGGATCGCCGATTTCTGCAGATTCCGGCAACGGATCGTCGTTCCCCTCGATCCGATCGAGGCAAAGGACTAG

Upstream 100 bases:

>100_bases
ACAAACCATAGCGCCACCTGTGCTAGAAGGCTCCCGCGATGCCTGGCGGCTCCCGCCAGTTCCATGGAAGCAAGGATTTC
GAACAAAGCAGCTCGTGAAA

Downstream 100 bases:

>100_bases
GCCGCTTGCCGGGCCGCCAGCAGGCCCCATACCCAGCGCCGCGAAAACACGCTATAGACGCCGCCCAAATGGCAAGGCCG
ACTGATACTTATGGCGAAAA

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKRLVINLDRSPERLAHMSKEFARIGIGFERVAGVDGKEHPDLMLQPQHAIHATRPLSGSEIACLHSHRACWTIIAQDEA
PYGAVFEDDMVFSSKAGALLGDTSWVPADADVVKLETFFSRTVIQRRRISAGHGFSMFRLRKGHPGAGGYLLSRRTARDF
LEATAQVNIAVDDLIFDPIISAGKTIYQLVPALCAQDQFVGGRLPSLLDQERDAARTASGLMTRQKKPMAVRISREAGRT
ARWIADFCRFRQRIVVPLDPIEAKD

Sequences:

>Translated_265_residues
MKRLVINLDRSPERLAHMSKEFARIGIGFERVAGVDGKEHPDLMLQPQHAIHATRPLSGSEIACLHSHRACWTIIAQDEA
PYGAVFEDDMVFSSKAGALLGDTSWVPADADVVKLETFFSRTVIQRRRISAGHGFSMFRLRKGHPGAGGYLLSRRTARDF
LEATAQVNIAVDDLIFDPIISAGKTIYQLVPALCAQDQFVGGRLPSLLDQERDAARTASGLMTRQKKPMAVRISREAGRT
ARWIADFCRFRQRIVVPLDPIEAKD
>Mature_265_residues
MKRLVINLDRSPERLAHMSKEFARIGIGFERVAGVDGKEHPDLMLQPQHAIHATRPLSGSEIACLHSHRACWTIIAQDEA
PYGAVFEDDMVFSSKAGALLGDTSWVPADADVVKLETFFSRTVIQRRRISAGHGFSMFRLRKGHPGAGGYLLSRRTARDF
LEATAQVNIAVDDLIFDPIISAGKTIYQLVPALCAQDQFVGGRLPSLLDQERDAARTASGLMTRQKKPMAVRISREAGRT
ARWIADFCRFRQRIVVPLDPIEAKD

Specific function: Involved in the biosynthesis of a moiety on the core of the lipopolysaccharide molecule [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasm. Note=Assembles at the inner surface of the cytoplasmic membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 29448; Mature: 29448

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLVINLDRSPERLAHMSKEFARIGIGFERVAGVDGKEHPDLMLQPQHAIHATRPLSGS
CCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEECCHHHHHCCCCCCCC
EIACLHSHRACWTIIAQDEAPYGAVFEDDMVFSSKAGALLGDTSWVPADADVVKLETFFS
CEEEEECCCCEEEEEECCCCCCCCEECCCEEECCCCCCEECCCCCCCCCCCHHHHHHHHH
RTVIQRRRISAGHGFSMFRLRKGHPGAGGYLLSRRTARDFLEATAQVNIAVDDLIFDPII
HHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHH
SAGKTIYQLVPALCAQDQFVGGRLPSLLDQERDAARTASGLMTRQKKPMAVRISREAGRT
HCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
ARWIADFCRFRQRIVVPLDPIEAKD
HHHHHHHHHHHHEEECCCCCCCCCC
>Mature Secondary Structure
MKRLVINLDRSPERLAHMSKEFARIGIGFERVAGVDGKEHPDLMLQPQHAIHATRPLSGS
CCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEECCHHHHHCCCCCCCC
EIACLHSHRACWTIIAQDEAPYGAVFEDDMVFSSKAGALLGDTSWVPADADVVKLETFFS
CEEEEECCCCEEEEEECCCCCCCCEECCCEEECCCCCCEECCCCCCCCCCCHHHHHHHHH
RTVIQRRRISAGHGFSMFRLRKGHPGAGGYLLSRRTARDFLEATAQVNIAVDDLIFDPII
HHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHH
SAGKTIYQLVPALCAQDQFVGGRLPSLLDQERDAARTASGLMTRQKKPMAVRISREAGRT
HCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
ARWIADFCRFRQRIVVPLDPIEAKD
HHHHHHHHHHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7781993; 1885539 [H]