Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 13474330

GI number: 13474330

Start: 4127867

End: 4128892

Strand: Reverse

Name: ybjT [H]

Synonym: mll5193

Alternate gene names: 13474330

Gene position: 4128892-4127867 (Counterclockwise)

Preceding gene: 13474332

Following gene: 13474328

Centisome position: 58.68

GC content: 65.89

Gene sequence:

>1026_bases
ATGAAACGGCTTCAGCCAAGCCATCTGGAAAGTGCGCCGGAGCCAGCCATGACCGAAATCCTGCAGACCCCAAAGCTCGT
CGTCGTCTTTGGCGGGTCTGGCTTTGTCGGCCGCCATGTCGTGCGCGCGCTGGCCAAGCGCGGCTATCGCATCCGGGTTG
CCTGCCGGCGGCCCGATCTTGCCGGCCATCTGCAGCCGCTCGGCAATGTCGGCCAGATCCAGCCGGTGCAGGCCAATGTG
CGCGTGCGCTGGTCGGTCGACCGCGCCGTGCAAGGCGCCGACCATGTCGTCAATCTCGTCGCCATCCTGCATGAAACCGG
CCGGCAGAAATTCTCCGCGGTGCACGAATTTGGCTCCCGCGCCGTCGCCGAGGCGGCGCGCTCGGTCGGTGCCGGGTTGA
CCCATATTTCGGCGCTTGGCGCCGATCTGGACTCCGAATCGGACTATGCGCGCACCAAGGCGCTCGGCGAAAAGGCCGTG
CTGGAGACGATCCCCGACGCCGTGATCTTCCGGCCGTCGATCAATTTCGGACCGGAAGACAGCTTCTTCAACCGCTTCGC
CAGCATGGCGCGCTATTCGCCGGTGCTGCCGCTGATCGGCGGCGGCCAGACCAAGTTCCAGCCGGTCTATGTCGGCGATG
TCGCCGAAGCGGTGGCGCGCTCGGTCGACGGCAAGATCGATCGCGGCCAGATCTACGAGCTTGGCGGCCCCAACGTGCTC
ACCTTCAAGGAATGCATGGAAGAGCTGTTGACCGTGATCGAGCGCAAGCGACTGCTGGTGCCGGTGCCGTGGTGGGTGGC
CAACATCCAGGCCTCGATCCTCGGCCTGTTGCCCAATCCGCTGCTGACCAAGGACCAGGTGATGCAGCTGCGCGAGCACA
ACATCGTCTCGGAAGCCGCCGCCAAGGCCAACCGGACGCTCGCCGGGCTCGGCATCCAGCCGCAATCGATCGCGACGATC
CTGCCGAGCTACCTCTGGCGCTTCCGCGCCGCCGGCCAGTTCCAGCAGCGCAAGCCAGCGGCATAA

Upstream 100 bases:

>100_bases
CTGCACTCGGTTGACGCCCGCATCGGCAAGGCATCTGACAAGCTTTCAAGAGGGGTGACGCGACGACGCGTCACCCTTTG
CCTTTGGCGCAAAACCGACT

Downstream 100 bases:

>100_bases
GCCCTAGGCGTGTTGATATTCAGGTCAGGCCGAGTCGAGAACGTTGGGTTCCGAGAACCGGAGCGGAGCGTACTCAAGTA
CGTGAGCACAGTTCTACTGC

Product: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKRLQPSHLESAPEPAMTEILQTPKLVVVFGGSGFVGRHVVRALAKRGYRIRVACRRPDLAGHLQPLGNVGQIQPVQANV
RVRWSVDRAVQGADHVVNLVAILHETGRQKFSAVHEFGSRAVAEAARSVGAGLTHISALGADLDSESDYARTKALGEKAV
LETIPDAVIFRPSINFGPEDSFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARSVDGKIDRGQIYELGGPNVL
TFKECMEELLTVIERKRLLVPVPWWVANIQASILGLLPNPLLTKDQVMQLREHNIVSEAAAKANRTLAGLGIQPQSIATI
LPSYLWRFRAAGQFQQRKPAA

Sequences:

>Translated_341_residues
MKRLQPSHLESAPEPAMTEILQTPKLVVVFGGSGFVGRHVVRALAKRGYRIRVACRRPDLAGHLQPLGNVGQIQPVQANV
RVRWSVDRAVQGADHVVNLVAILHETGRQKFSAVHEFGSRAVAEAARSVGAGLTHISALGADLDSESDYARTKALGEKAV
LETIPDAVIFRPSINFGPEDSFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARSVDGKIDRGQIYELGGPNVL
TFKECMEELLTVIERKRLLVPVPWWVANIQASILGLLPNPLLTKDQVMQLREHNIVSEAAAKANRTLAGLGIQPQSIATI
LPSYLWRFRAAGQFQQRKPAA
>Mature_341_residues
MKRLQPSHLESAPEPAMTEILQTPKLVVVFGGSGFVGRHVVRALAKRGYRIRVACRRPDLAGHLQPLGNVGQIQPVQANV
RVRWSVDRAVQGADHVVNLVAILHETGRQKFSAVHEFGSRAVAEAARSVGAGLTHISALGADLDSESDYARTKALGEKAV
LETIPDAVIFRPSINFGPEDSFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARSVDGKIDRGQIYELGGPNVL
TFKECMEELLTVIERKRLLVPVPWWVANIQASILGLLPNPLLTKDQVMQLREHNIVSEAAAKANRTLAGLGIQPQSIATI
LPSYLWRFRAAGQFQQRKPAA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=320, Percent_Identity=31.25, Blast_Score=138, Evalue=9e-33,
Organism=Escherichia coli, GI87081793, Length=288, Percent_Identity=25.6944444444444, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17556106, Length=311, Percent_Identity=29.2604501607717, Blast_Score=118, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24667554, Length=233, Percent_Identity=32.618025751073, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 37197; Mature: 37197

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLQPSHLESAPEPAMTEILQTPKLVVVFGGSGFVGRHVVRALAKRGYRIRVACRRPDL
CCCCCCCHHCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC
AGHLQPLGNVGQIQPVQANVRVRWSVDRAVQGADHVVNLVAILHETGRQKFSAVHEFGSR
CHHHCCCCCCCCEEEEEECEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAEAARSVGAGLTHISALGADLDSESDYARTKALGEKAVLETIPDAVIFRPSINFGPED
HHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCH
SFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARSVDGKIDRGQIYELGGPNVL
HHHHHHHHHHHCCCCCEEECCCCCEECEEEECHHHHHHHHHHCCCCCCCEEEECCCCCEE
TFKECMEELLTVIERKRLLVPVPWWVANIQASILGLLPNPLLTKDQVMQLREHNIVSEAA
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AKANRTLAGLGIQPQSIATILPSYLWRFRAAGQFQQRKPAA
HHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MKRLQPSHLESAPEPAMTEILQTPKLVVVFGGSGFVGRHVVRALAKRGYRIRVACRRPDL
CCCCCCCHHCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC
AGHLQPLGNVGQIQPVQANVRVRWSVDRAVQGADHVVNLVAILHETGRQKFSAVHEFGSR
CHHHCCCCCCCCEEEEEECEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAEAARSVGAGLTHISALGADLDSESDYARTKALGEKAVLETIPDAVIFRPSINFGPED
HHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCH
SFFNRFASMARYSPVLPLIGGGQTKFQPVYVGDVAEAVARSVDGKIDRGQIYELGGPNVL
HHHHHHHHHHHCCCCCEEECCCCCEECEEEECHHHHHHHHHHCCCCCCCEEEECCCCCEE
TFKECMEELLTVIERKRLLVPVPWWVANIQASILGLLPNPLLTKDQVMQLREHNIVSEAA
HHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AKANRTLAGLGIQPQSIATILPSYLWRFRAAGQFQQRKPAA
HHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]