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The map label for this gene is 13473873

Identifier: 13473873

GI number: 13473873

Start: 3660460

End: 3661704

Strand: Direct

Name: 13473873

Synonym: mlr4613

Alternate gene names: NA

Gene position: 3660460-3661704 (Clockwise)

Preceding gene: 13473872

Following gene: 13473880

Centisome position: 52.02

GC content: 71.33

Gene sequence:

>1245_bases
ATGGACAGTCGCCCGGAGATCGCCCGGGCGGCCGCCGAGGCCGCCGCCCGGCAGAGCTATGGCAAGCTGGTCGCCTGGCT
CGCGGCGCGCACCCGCGACGTGACCGCAGCCGAGGATGCGCTGGCCGACGCCTTTGCCGCCGCGCTCGAGCGCTGGCCGA
AATCAGGCGTGCCTGAAAAGCCGGAAGCCTGGCTTCTGGCTGTCGCGCGGCGGCGGCGGGTCGATGCGGTTCGCCGGCGG
CTCACCCGGGAGGCGGCCCGCGATCATCTCAAGCTGATTGCCGAGGAGATGGAGGCGCGCATGACTGACGAAGAGCTGCC
CGACGAACGGCTGCGGCTGATGTTCGCCTGCGCGCATCCGGCGATCGAGCCGGGCGTGCGGGCGCCGCTGATCCTGCAGA
CCGTGCTGGGCTTCGATGCCGCGACCATCGCTTCGGCCTTCCTGGTCTCGCCGGCAACGATGGGCCAGCGCCTGGTGCGC
GCCAAGACGCGCATCCGCGAAACCGGCATTCCGTTCCGTGTGCCGGAGCGGGCCGAACTCGGCGAACGGCTGGGCGCGGT
GCTGGAGGCGATCTACGCCGCCTTCGCCGAAGGCTGGTCCGATCCGGCCGGCACCGAAACGCAGCGCCGCAACCTCGCCA
CCGAAGGCATCTGGCTCGGCCGCCTGGTGGCGACGCTGATGCCGCAAGAGCCGGAAGCGCTTGGCCTGCTTGCGCTGATG
CTGTTTGCCGAGGCCCGCCGCGCCGCGCGACGCAGTGTCGAAGGCGACTTCGTGCCGCTGGCCGAACAGGATTGCGACCT
GTGGGACCGAGCCCTCATCGACGAGGCGGAGGCGCTTCTGTCCCATGCCGCGGCGAGCGGTGTGGTCGGCCGCTACCAGC
TCGAGGCGGCCGTCCAGTCCGCCCACGCGGCGCGGCGGCTGACTGGCCGCACCGACTGGCCGGCGATCCGCGCGCTTTAC
GACGCGCTGTTTTCGATCGCCGGATCGCCGGTGGTGGCGATCAACCGCGCGGTGGCGCTCGCCGAGACGGAGGGCGCGAT
GGCAGGGCTGGCGGCGCTTTACGTGCTGGGCGACGACAAGCGGCTCAATGAGTATCAGCCCTATTGGGCGGCGCGGGCCG
GCCTCCTGGCCAGGCTTGGCCAGGTTCCGCAGGCAACCGAGGCCTATGACAGGGCAATCGGCCTCGAACGCGACCCGGCG
GTGCGCCGCTTCCTGCAAGGCAAAAGGGCGGCGCTCAGACACTAA

Upstream 100 bases:

>100_bases
TGTCCGGCGGCCAGCACCGGCACGGTCGAGTTGCGGCCGATCTGGGAACTGGCCGACTACATGCCGCAGAAATGACGACG
TGCCAAGAAATGACCATGTG

Downstream 100 bases:

>100_bases
CCAAGCGTCGCAGGACGCCGCCTTACACGCAGGCGTTCAGGTCGGCCACATCTCGTGTGACGTGTTGAGCGTCTTCAGCA
GCGGATGGTCGCGCAGCCTG

Product: ECF family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MDSRPEIARAAAEAAARQSYGKLVAWLAARTRDVTAAEDALADAFAAALERWPKSGVPEKPEAWLLAVARRRRVDAVRRR
LTREAARDHLKLIAEEMEARMTDEELPDERLRLMFACAHPAIEPGVRAPLILQTVLGFDAATIASAFLVSPATMGQRLVR
AKTRIRETGIPFRVPERAELGERLGAVLEAIYAAFAEGWSDPAGTETQRRNLATEGIWLGRLVATLMPQEPEALGLLALM
LFAEARRAARRSVEGDFVPLAEQDCDLWDRALIDEAEALLSHAAASGVVGRYQLEAAVQSAHAARRLTGRTDWPAIRALY
DALFSIAGSPVVAINRAVALAETEGAMAGLAALYVLGDDKRLNEYQPYWAARAGLLARLGQVPQATEAYDRAIGLERDPA
VRRFLQGKRAALRH

Sequences:

>Translated_414_residues
MDSRPEIARAAAEAAARQSYGKLVAWLAARTRDVTAAEDALADAFAAALERWPKSGVPEKPEAWLLAVARRRRVDAVRRR
LTREAARDHLKLIAEEMEARMTDEELPDERLRLMFACAHPAIEPGVRAPLILQTVLGFDAATIASAFLVSPATMGQRLVR
AKTRIRETGIPFRVPERAELGERLGAVLEAIYAAFAEGWSDPAGTETQRRNLATEGIWLGRLVATLMPQEPEALGLLALM
LFAEARRAARRSVEGDFVPLAEQDCDLWDRALIDEAEALLSHAAASGVVGRYQLEAAVQSAHAARRLTGRTDWPAIRALY
DALFSIAGSPVVAINRAVALAETEGAMAGLAALYVLGDDKRLNEYQPYWAARAGLLARLGQVPQATEAYDRAIGLERDPA
VRRFLQGKRAALRH
>Mature_414_residues
MDSRPEIARAAAEAAARQSYGKLVAWLAARTRDVTAAEDALADAFAAALERWPKSGVPEKPEAWLLAVARRRRVDAVRRR
LTREAARDHLKLIAEEMEARMTDEELPDERLRLMFACAHPAIEPGVRAPLILQTVLGFDAATIASAFLVSPATMGQRLVR
AKTRIRETGIPFRVPERAELGERLGAVLEAIYAAFAEGWSDPAGTETQRRNLATEGIWLGRLVATLMPQEPEALGLLALM
LFAEARRAARRSVEGDFVPLAEQDCDLWDRALIDEAEALLSHAAASGVVGRYQLEAAVQSAHAARRLTGRTDWPAIRALY
DALFSIAGSPVVAINRAVALAETEGAMAGLAALYVLGDDKRLNEYQPYWAARAGLLARLGQVPQATEAYDRAIGLERDPA
VRRFLQGKRAALRH

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45275; Mature: 45275

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRPEIARAAAEAAARQSYGKLVAWLAARTRDVTAAEDALADAFAAALERWPKSGVPEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PEAWLLAVARRRRVDAVRRRLTREAARDHLKLIAEEMEARMTDEELPDERLRLMFACAHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHCC
AIEPGVRAPLILQTVLGFDAATIASAFLVSPATMGQRLVRAKTRIRETGIPFRVPERAEL
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GERLGAVLEAIYAAFAEGWSDPAGTETQRRNLATEGIWLGRLVATLMPQEPEALGLLALM
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LFAEARRAARRSVEGDFVPLAEQDCDLWDRALIDEAEALLSHAAASGVVGRYQLEAAVQS
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AHAARRLTGRTDWPAIRALYDALFSIAGSPVVAINRAVALAETEGAMAGLAALYVLGDDK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RLNEYQPYWAARAGLLARLGQVPQATEAYDRAIGLERDPAVRRFLQGKRAALRH
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSRPEIARAAAEAAARQSYGKLVAWLAARTRDVTAAEDALADAFAAALERWPKSGVPEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PEAWLLAVARRRRVDAVRRRLTREAARDHLKLIAEEMEARMTDEELPDERLRLMFACAHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHCC
AIEPGVRAPLILQTVLGFDAATIASAFLVSPATMGQRLVRAKTRIRETGIPFRVPERAEL
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GERLGAVLEAIYAAFAEGWSDPAGTETQRRNLATEGIWLGRLVATLMPQEPEALGLLALM
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LFAEARRAARRSVEGDFVPLAEQDCDLWDRALIDEAEALLSHAAASGVVGRYQLEAAVQS
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AHAARRLTGRTDWPAIRALYDALFSIAGSPVVAINRAVALAETEGAMAGLAALYVLGDDK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RLNEYQPYWAARAGLLARLGQVPQATEAYDRAIGLERDPAVRRFLQGKRAALRH
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]