Click here to switch to the map view.

The map label for this gene is 13473827

Identifier: 13473827

GI number: 13473827

Start: 3618026

End: 3619303

Strand: Reverse

Name: 13473827

Synonym: mll4552

Alternate gene names: NA

Gene position: 3619303-3618026 (Counterclockwise)

Preceding gene: 13473828

Following gene: 13473826

Centisome position: 51.44

GC content: 63.07

Gene sequence:

>1278_bases
ATGTTCTACCAGCTCTACGAATTGAACCATGCAGCGTTGCAGCCGGCCCGGCTCTATGCCGATGCGGTGCGGATGTTCTA
TTCCAACCCGCTCAATCCGATCGCGCACACGCACTGGGGCCGTTCGGTCGCGGCGGGTGCCGAACTGTTCGAACGCACCA
CGCGCCGCTACGGCAAGCCCGCCTTCGGCCTCGACAAGACCGTCGTCGACTGGAAGAGCGTCGAGGTCACCGAAAAGACC
GTCTGGTCGAAGCCGTTCTGCAATCTCGTCCGCTTCGAGCGCGCCATGCCCGCCGGCCGCAAGCCGGATCCGAAACTGCT
GATCGTGGCGCCGATGTCGGGCCACTATGCGACGCTGCTGCGCGGCACGGTGGAAGCCATGCTGCCCTACGCCGATGTCC
ACATCACCGACTGGGTCGACGCCCGCATGGTGCCGCTGGTGGACGGCAGCTTCGATCTCGACGATTATATCGACTATATC
ATCGAGATGTTCCACGCGCTGGGGCCCGACACCCATGTGATGGCCGTGTGCCAGCCTTCCGTGCCGGTCCTGGCGGCGGT
GGCGCTGATGGAGGCGAAGGGCGACCCCTTCGTGCCCTCGACCATGACCCTGATGGGCGGCCCGATCGACACGCGCCGCA
ACCCGACCGCGGTCAATCTCCTGGCCGAGGAAAAGGGCATCGACTGGTTCCGCGACAATGTCGTCATGCGCGCGCCCTGG
CCGGTGCCCGGCTTCGGCCGCGAGGTCTATCCGGGCTTCCTGCAGCTGTCCGGCTTCATGAGCATGAACCTCGACCGCCA
CATCATCGCCCACAAGGACTTCTTCATGCACCTTGTGAAGAATGACGGTGACAATGCCGAGAAGCACCGCGACTTCTACG
ACGAATATATGGCCGTCATGGATCTGACGGCGGAGTTCTACCTGCAGACCGTCGACACCGTCTTCGTGCGCCATGCCTTG
CCCAAGGGCGAGATGAAGCATCGCGGCGCCGCCATCGATACATCAGCTATCCGCAACGTCGCCTTGTTCACGGTCGAAGG
CGAGAACGACGATATTTCCGGCCTTGGCCAGACCAAGGCGGCGCAGGATCTGTGCATCAACATTCCGGCCGACAAGAAGG
CGCATTACATGCAGCCGGCGGTCGGCCATTACGGCGTCTTCAACGGCTCGCGCTTCCGCTCCGAGATCGTGCCGCGCATC
GTCGACTTCATCACCAGCTATGGCCGTCAGAACCGCGTCGCTGTGAAGCCGAAACTGGTCCGCACCGCCAAACGGTAA

Upstream 100 bases:

>100_bases
CGTATTGCATCGCAGCAATTAGTTGTTAACCTCGCCACGAGACATTTGAGGCTCGGCGCTGCTCGTCGTCCCTTCGGTCG
CAGCAGCAGCGGGGTTGTCG

Downstream 100 bases:

>100_bases
GCCGTTCCGGGACAGATCGGCAGCAGGGCCGATTCTGTTGCACAATAGAGGCTGCCCCTCCCCCGCGGGTAACCATGCTG
CAAATCAGTCCGTCGTCGTA

Product: intracellular PHB depolymerase

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; PHB De-Polymerase; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MFYQLYELNHAALQPARLYADAVRMFYSNPLNPIAHTHWGRSVAAGAELFERTTRRYGKPAFGLDKTVVDWKSVEVTEKT
VWSKPFCNLVRFERAMPAGRKPDPKLLIVAPMSGHYATLLRGTVEAMLPYADVHITDWVDARMVPLVDGSFDLDDYIDYI
IEMFHALGPDTHVMAVCQPSVPVLAAVALMEAKGDPFVPSTMTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPW
PVPGFGREVYPGFLQLSGFMSMNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVMDLTAEFYLQTVDTVFVRHAL
PKGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKAAQDLCINIPADKKAHYMQPAVGHYGVFNGSRFRSEIVPRI
VDFITSYGRQNRVAVKPKLVRTAKR

Sequences:

>Translated_425_residues
MFYQLYELNHAALQPARLYADAVRMFYSNPLNPIAHTHWGRSVAAGAELFERTTRRYGKPAFGLDKTVVDWKSVEVTEKT
VWSKPFCNLVRFERAMPAGRKPDPKLLIVAPMSGHYATLLRGTVEAMLPYADVHITDWVDARMVPLVDGSFDLDDYIDYI
IEMFHALGPDTHVMAVCQPSVPVLAAVALMEAKGDPFVPSTMTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPW
PVPGFGREVYPGFLQLSGFMSMNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVMDLTAEFYLQTVDTVFVRHAL
PKGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKAAQDLCINIPADKKAHYMQPAVGHYGVFNGSRFRSEIVPRI
VDFITSYGRQNRVAVKPKLVRTAKR
>Mature_425_residues
MFYQLYELNHAALQPARLYADAVRMFYSNPLNPIAHTHWGRSVAAGAELFERTTRRYGKPAFGLDKTVVDWKSVEVTEKT
VWSKPFCNLVRFERAMPAGRKPDPKLLIVAPMSGHYATLLRGTVEAMLPYADVHITDWVDARMVPLVDGSFDLDDYIDYI
IEMFHALGPDTHVMAVCQPSVPVLAAVALMEAKGDPFVPSTMTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPW
PVPGFGREVYPGFLQLSGFMSMNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVMDLTAEFYLQTVDTVFVRHAL
PKGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKAAQDLCINIPADKKAHYMQPAVGHYGVFNGSRFRSEIVPRI
VDFITSYGRQNRVAVKPKLVRTAKR

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47869; Mature: 47869

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYQLYELNHAALQPARLYADAVRMFYSNPLNPIAHTHWGRSVAAGAELFERTTRRYGKP
CEEEEEECCHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCC
AFGLDKTVVDWKSVEVTEKTVWSKPFCNLVRFERAMPAGRKPDPKLLIVAPMSGHYATLL
CCCCCCCEECCCCCEEHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
RGTVEAMLPYADVHITDWVDARMVPLVDGSFDLDDYIDYIIEMFHALGPDTHVMAVCQPS
HHHHHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
VPVLAAVALMEAKGDPFVPSTMTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPW
CHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEHHCCCCHHHCCEEEECCC
PVPGFGREVYPGFLQLSGFMSMNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVM
CCCCCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DLTAEFYLQTVDTVFVRHALPKGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKA
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHCEEEEEEEECCCCCCCCCCCCCC
AQDLCINIPADKKAHYMQPAVGHYGVFNGSRFRSEIVPRIVDFITSYGRQNRVAVKPKLV
CCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH
RTAKR
HHCCC
>Mature Secondary Structure
MFYQLYELNHAALQPARLYADAVRMFYSNPLNPIAHTHWGRSVAAGAELFERTTRRYGKP
CEEEEEECCHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCC
AFGLDKTVVDWKSVEVTEKTVWSKPFCNLVRFERAMPAGRKPDPKLLIVAPMSGHYATLL
CCCCCCCEECCCCCEEHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
RGTVEAMLPYADVHITDWVDARMVPLVDGSFDLDDYIDYIIEMFHALGPDTHVMAVCQPS
HHHHHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
VPVLAAVALMEAKGDPFVPSTMTLMGGPIDTRRNPTAVNLLAEEKGIDWFRDNVVMRAPW
CHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEHHCCCCHHHCCEEEECCC
PVPGFGREVYPGFLQLSGFMSMNLDRHIIAHKDFFMHLVKNDGDNAEKHRDFYDEYMAVM
CCCCCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DLTAEFYLQTVDTVFVRHALPKGEMKHRGAAIDTSAIRNVALFTVEGENDDISGLGQTKA
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHCEEEEEEEECCCCCCCCCCCCCC
AQDLCINIPADKKAHYMQPAVGHYGVFNGSRFRSEIVPRIVDFITSYGRQNRVAVKPKLV
CCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH
RTAKR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA