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The map label for this gene is yciR [C]

Identifier: 13473684

GI number: 13473684

Start: 3466873

End: 3469089

Strand: Reverse

Name: yciR [C]

Synonym: mll4364

Alternate gene names: 13473684

Gene position: 3469089-3466873 (Counterclockwise)

Preceding gene: 13473689

Following gene: 13473683

Centisome position: 49.3

GC content: 64.68

Gene sequence:

>2217_bases
ATGGGCTGCATTTATGCCCGGGATTTAAGCAAGTTTTCACGTCCTGCCGCTAAACCAGCGACACAGAATTGCCCTGGCCA
CGCAACCGTGGCGAAGCGGCTTTTGCCTGCTCGTTGCGGGTGTCTCGGGCTTGGACCATTCCTGATGCGCGTCATTTCAT
GCATCGTCACGGAGCATAATCTGTGGCTCGTCCTGCTGGCGGCGCTGATGTGCGTCACCGGTTGCTGGGTGACGATCGGC
CTCCTGGACCGCGCGAGGAAAACCGTTGGCGTGCAGATGCGGGGATGGCTTTTCCTGACCGCGGTCGCGGCCGGTTCCTC
GATCTGGTGCACGCATTTCATCGCCATGCTGGCCTATCAGCCCGGCGCGCCGATCACCTTCGATCCGGCGTTCACCATGA
TCTCCCTGGTCATCGCCATGGTCGGAACCGGGGCGGGCTTCGGTCTGGCGCTCGACAAAGGCCGCGGCCTGGCGCCGGAA
TGGGGCGGATGCCTTGTCGGGCTGGCGATCTCGGCCATGCACTATACCGGCATGATGGCCTATCACGTGGCCGGCATCGT
CGAATGGGACGCCTTCTACGTCGTCGCTTCCGTGCTGATCGCGATGGCATTCTCCTCCGTGGCGGTCGGCCATGCGATGC
GCCGGCCGTACCGCTGGTCGCACTATGTCGGCATCGGGCTTCTGGTGCTGGCGATCGTCGGCCTGCATTTCACCGCGATG
GCGGCGGTGGCGGTGACGCCGCTTTCCTTCATCACCACGGGGACCAATCCCGATATCCTGGAAGCGATGGCCGTCGCGGT
CGCCGTGGCCGGGCTGATCGTCGCCGCCACCGGCTTCGCCAGCTATCTGATCGACGAACGCGGTCGGCTCGAAAGCTTCG
AGCGGCTGCAGCATCTTGCCCTCAACGACTCGCTTACCGGCCTTGCCAACCGGGTCTCCTTCAACGACCGCCTCGACCAT
GAGATCGAGCGGGCGCGCGAGCATCAGGACACGATGACCGCCGTCATCGTCATCGACCTCGACCGGTTCAAGGAAATCAA
CGACCTCAGGGGACACGCCGCCGGCGACCAGGCGCTCAAGATCATTGCCCGCAGGCTGGCGAAGCTGACCGGCGACGGCG
AGTTCGTCGCCCGGCTGGGCGGCGACGAATTTGCCGCCATCAAGCGCTTCAAGGACCAGAACGACCTGCTCGGCCTGGTG
TCGCGGCTGGAGAAATCATTGTTCGAGCCGTTGCGGATCGACGATTTCGAGACCGTCACCGGCGCCAGCATCGGCGTTGC
CGTCTATCCGCGGGACGGGGCCGACCGGGAGAGGCTGGTCAGCAATGCGGATCTGGCCATGTACCGAGCCAAGAACGACG
TGACGCGGGCCGTCTGCTTCTACGAATCGGCGATGGACGAGACGGCGCGGGCGCGCCGGGCGCTGGCCACCGACCTTCGC
CAGGCAATCGACCGGGGCGAGCTCTCGCTGCACTATCAGGTGCAGACCTCGGTGCAGACCGGCGCCACGTGCGGCTACGA
GGCGTTGCTGCGCTGGACCCATCCCGTGCACGGCATGATCCCGCCCGCCGAATTCATTCCGATCGCCGAAGAGAACGGTT
CCATCCTGGCGATCGGCGAATGGGTGCTGCGCACCGCATGCCGCCAGGCCGCCTCCTGGGACAATGGCCACAAGATCGCG
GTCAATCTGTCGCCGGTGCAGTTCGCCCATGCCGATCTCGCCACGCTCGTCCATCAGATCCTGGTCGAGACCGGCCTGTC
GCCGAAGCGTCTCGAGCTCGAGCTGACCGAATCGACGATCGTCGCCGACAAGGTGCGCACGCTGCACGTGCTGCGCCAGA
TCAAGGCGCTGGGCGTGACGATCGCGATCGACGATTTCGGCACTGGCTATTCCTCGCTCGACACGCTGCGCTCGTTCCCA
TTCGACAAGATCAAGCTCGATCGCTCCTTCATGGCCGATGTCGAGCGCAGCCCGCAGGCCAAGGCGATCATTCGCGCCGT
GCTGACGCTGGGGCGCAGCCTCGACATTCCCGTGCTTGCCGAAGGTGTCGAGACCCATGTCCAGCTCACCATCCTGCAGG
TCGAAGGCTGCAACGAGGCGCAAGGCTATTTCCTCGGCCGGCCCAAGCCGATCGATCAGATCGGGCTCATCAGCGGTGCT
GACACCGGTGCACCCACCTTCGAGGTGCCTGTGAGGATGCGAGTAGCCATCGGCTGA

Upstream 100 bases:

>100_bases
CTGATCCAGCGCGCGGCGAGGGCATAGAACCGCATCAAGCTTTTCGCTAGCGCGGTCCTCGGTTTGCGATAAAGCGCCTG
GGAAACAACCTGCTACAATC

Downstream 100 bases:

>100_bases
CGCTCGCCGCCACGAGCGGGAACTGTAGTTGCCGAAGCGATTGCCATGCTGGATCAATGCTTTGTCTGGCGCCGTCACAC
CGCATCCTGTATAGGCCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MGCIYARDLSKFSRPAAKPATQNCPGHATVAKRLLPARCGCLGLGPFLMRVISCIVTEHNLWLVLLAALMCVTGCWVTIG
LLDRARKTVGVQMRGWLFLTAVAAGSSIWCTHFIAMLAYQPGAPITFDPAFTMISLVIAMVGTGAGFGLALDKGRGLAPE
WGGCLVGLAISAMHYTGMMAYHVAGIVEWDAFYVVASVLIAMAFSSVAVGHAMRRPYRWSHYVGIGLLVLAIVGLHFTAM
AAVAVTPLSFITTGTNPDILEAMAVAVAVAGLIVAATGFASYLIDERGRLESFERLQHLALNDSLTGLANRVSFNDRLDH
EIERAREHQDTMTAVIVIDLDRFKEINDLRGHAAGDQALKIIARRLAKLTGDGEFVARLGGDEFAAIKRFKDQNDLLGLV
SRLEKSLFEPLRIDDFETVTGASIGVAVYPRDGADRERLVSNADLAMYRAKNDVTRAVCFYESAMDETARARRALATDLR
QAIDRGELSLHYQVQTSVQTGATCGYEALLRWTHPVHGMIPPAEFIPIAEENGSILAIGEWVLRTACRQAASWDNGHKIA
VNLSPVQFAHADLATLVHQILVETGLSPKRLELELTESTIVADKVRTLHVLRQIKALGVTIAIDDFGTGYSSLDTLRSFP
FDKIKLDRSFMADVERSPQAKAIIRAVLTLGRSLDIPVLAEGVETHVQLTILQVEGCNEAQGYFLGRPKPIDQIGLISGA
DTGAPTFEVPVRMRVAIG

Sequences:

>Translated_738_residues
MGCIYARDLSKFSRPAAKPATQNCPGHATVAKRLLPARCGCLGLGPFLMRVISCIVTEHNLWLVLLAALMCVTGCWVTIG
LLDRARKTVGVQMRGWLFLTAVAAGSSIWCTHFIAMLAYQPGAPITFDPAFTMISLVIAMVGTGAGFGLALDKGRGLAPE
WGGCLVGLAISAMHYTGMMAYHVAGIVEWDAFYVVASVLIAMAFSSVAVGHAMRRPYRWSHYVGIGLLVLAIVGLHFTAM
AAVAVTPLSFITTGTNPDILEAMAVAVAVAGLIVAATGFASYLIDERGRLESFERLQHLALNDSLTGLANRVSFNDRLDH
EIERAREHQDTMTAVIVIDLDRFKEINDLRGHAAGDQALKIIARRLAKLTGDGEFVARLGGDEFAAIKRFKDQNDLLGLV
SRLEKSLFEPLRIDDFETVTGASIGVAVYPRDGADRERLVSNADLAMYRAKNDVTRAVCFYESAMDETARARRALATDLR
QAIDRGELSLHYQVQTSVQTGATCGYEALLRWTHPVHGMIPPAEFIPIAEENGSILAIGEWVLRTACRQAASWDNGHKIA
VNLSPVQFAHADLATLVHQILVETGLSPKRLELELTESTIVADKVRTLHVLRQIKALGVTIAIDDFGTGYSSLDTLRSFP
FDKIKLDRSFMADVERSPQAKAIIRAVLTLGRSLDIPVLAEGVETHVQLTILQVEGCNEAQGYFLGRPKPIDQIGLISGA
DTGAPTFEVPVRMRVAIG
>Mature_737_residues
GCIYARDLSKFSRPAAKPATQNCPGHATVAKRLLPARCGCLGLGPFLMRVISCIVTEHNLWLVLLAALMCVTGCWVTIGL
LDRARKTVGVQMRGWLFLTAVAAGSSIWCTHFIAMLAYQPGAPITFDPAFTMISLVIAMVGTGAGFGLALDKGRGLAPEW
GGCLVGLAISAMHYTGMMAYHVAGIVEWDAFYVVASVLIAMAFSSVAVGHAMRRPYRWSHYVGIGLLVLAIVGLHFTAMA
AVAVTPLSFITTGTNPDILEAMAVAVAVAGLIVAATGFASYLIDERGRLESFERLQHLALNDSLTGLANRVSFNDRLDHE
IERAREHQDTMTAVIVIDLDRFKEINDLRGHAAGDQALKIIARRLAKLTGDGEFVARLGGDEFAAIKRFKDQNDLLGLVS
RLEKSLFEPLRIDDFETVTGASIGVAVYPRDGADRERLVSNADLAMYRAKNDVTRAVCFYESAMDETARARRALATDLRQ
AIDRGELSLHYQVQTSVQTGATCGYEALLRWTHPVHGMIPPAEFIPIAEENGSILAIGEWVLRTACRQAASWDNGHKIAV
NLSPVQFAHADLATLVHQILVETGLSPKRLELELTESTIVADKVRTLHVLRQIKALGVTIAIDDFGTGYSSLDTLRSFPF
DKIKLDRSFMADVERSPQAKAIIRAVLTLGRSLDIPVLAEGVETHVQLTILQVEGCNEAQGYFLGRPKPIDQIGLISGAD
TGAPTFEVPVRMRVAIG

Specific function: Unknown

COG id: COG3300

COG function: function code T; MHYT domain (predicted integral membrane sensor domain)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=420, Percent_Identity=37.3809523809524, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=33.1775700934579, Blast_Score=242, Evalue=7e-65,
Organism=Escherichia coli, GI226510982, Length=439, Percent_Identity=27.1070615034169, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1788502, Length=259, Percent_Identity=33.2046332046332, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=35.9504132231405, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=31.4893617021277, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=35.8649789029536, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI87082096, Length=473, Percent_Identity=23.8900634249471, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1786507, Length=234, Percent_Identity=31.1965811965812, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=28.5106382978723, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=30.1652892561983, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=29.2490118577075, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=234, Percent_Identity=31.1965811965812, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI1788381, Length=438, Percent_Identity=25.3424657534247, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=35.3333333333333, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=36.7816091954023, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=32.0512820512821, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=36.1290322580645, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789650, Length=434, Percent_Identity=20.9677419354839, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=29.6052631578947, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.3373493975904, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 80085; Mature: 79954

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCIYARDLSKFSRPAAKPATQNCPGHATVAKRLLPARCGCLGLGPFLMRVISCIVTEHN
CCCEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
LWLVLLAALMCVTGCWVTIGLLDRARKTVGVQMRGWLFLTAVAAGSSIWCTHFIAMLAYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHEEEEHHHCCCCHHHHHHHHHHHCC
PGAPITFDPAFTMISLVIAMVGTGAGFGLALDKGRGLAPEWGGCLVGLAISAMHYTGMMA
CCCCEEECHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
YHVAGIVEWDAFYVVASVLIAMAFSSVAVGHAMRRPYRWSHYVGIGLLVLAIVGLHFTAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AAVAVTPLSFITTGTNPDILEAMAVAVAVAGLIVAATGFASYLIDERGRLESFERLQHLA
HHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LNDSLTGLANRVSFNDRLDHEIERAREHQDTMTAVIVIDLDRFKEINDLRGHAAGDQALK
HCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHH
IIARRLAKLTGDGEFVARLGGDEFAAIKRFKDQNDLLGLVSRLEKSLFEPLRIDDFETVT
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
GASIGVAVYPRDGADRERLVSNADLAMYRAKNDVTRAVCFYESAMDETARARRALATDLR
CCCEEEEEECCCCCCHHHHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIDRGELSLHYQVQTSVQTGATCGYEALLRWTHPVHGMIPPAEFIPIAEENGSILAIGE
HHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEEHH
WVLRTACRQAASWDNGHKIAVNLSPVQFAHADLATLVHQILVETGLSPKRLELELTESTI
HHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
VADKVRTLHVLRQIKALGVTIAIDDFGTGYSSLDTLRSFPFDKIKLDRSFMADVERSPQA
HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHEECCHHHHHHHHCCCHH
KAIIRAVLTLGRSLDIPVLAEGVETHVQLTILQVEGCNEAQGYFLGRPKPIDQIGLISGA
HHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEEEEECCCCCCCEECCCCCCCCHHCCCCCC
DTGAPTFEVPVRMRVAIG
CCCCCCEECCEEEEEECC
>Mature Secondary Structure 
GCIYARDLSKFSRPAAKPATQNCPGHATVAKRLLPARCGCLGLGPFLMRVISCIVTEHN
CCEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
LWLVLLAALMCVTGCWVTIGLLDRARKTVGVQMRGWLFLTAVAAGSSIWCTHFIAMLAYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHEEEEHHHCCCCHHHHHHHHHHHCC
PGAPITFDPAFTMISLVIAMVGTGAGFGLALDKGRGLAPEWGGCLVGLAISAMHYTGMMA
CCCCEEECHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
YHVAGIVEWDAFYVVASVLIAMAFSSVAVGHAMRRPYRWSHYVGIGLLVLAIVGLHFTAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AAVAVTPLSFITTGTNPDILEAMAVAVAVAGLIVAATGFASYLIDERGRLESFERLQHLA
HHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LNDSLTGLANRVSFNDRLDHEIERAREHQDTMTAVIVIDLDRFKEINDLRGHAAGDQALK
HCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHH
IIARRLAKLTGDGEFVARLGGDEFAAIKRFKDQNDLLGLVSRLEKSLFEPLRIDDFETVT
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
GASIGVAVYPRDGADRERLVSNADLAMYRAKNDVTRAVCFYESAMDETARARRALATDLR
CCCEEEEEECCCCCCHHHHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIDRGELSLHYQVQTSVQTGATCGYEALLRWTHPVHGMIPPAEFIPIAEENGSILAIGE
HHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEEHH
WVLRTACRQAASWDNGHKIAVNLSPVQFAHADLATLVHQILVETGLSPKRLELELTESTI
HHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
VADKVRTLHVLRQIKALGVTIAIDDFGTGYSSLDTLRSFPFDKIKLDRSFMADVERSPQA
HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHEECCHHHHHHHHCCCHH
KAIIRAVLTLGRSLDIPVLAEGVETHVQLTILQVEGCNEAQGYFLGRPKPIDQIGLISGA
HHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEEEEECCCCCCCEECCCCCCCCHHCCCCCC
DTGAPTFEVPVRMRVAIG
CCCCCCEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]