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The map label for this gene is sdhC [H]

Identifier: 13473609

GI number: 13473609

Start: 3401427

End: 3401846

Strand: Reverse

Name: sdhC [H]

Synonym: mll4266

Alternate gene names: 13473609

Gene position: 3401846-3401427 (Counterclockwise)

Preceding gene: 13473610

Following gene: 13473608

Centisome position: 48.35

GC content: 64.52

Gene sequence:

>420_bases
ATGAGCAAATCACCAGCCACCCGCGAATTCGCCAGACGTGAACGGCCGCTTTCGCCGCACCTGACGATCTACCGGCCGCC
GATCACGATGACGATGTCGATCATCCATCGCATCACCGGCGGGGCGCTTTATTTCGGCACACTGCTGGTCGCGATCTGGC
TGATGGCGGCGGCGAGCTCTCAGGCGACCTTCGACTGGGTCAACTGGGCCTTCGGCACCTGGCTCGGCCGGCTGATCCTG
TTCGGCTACACCTGGGCGCTGATGCACCACATGCTGGGCGGCGTGCGCCATCTGGTCTGGGATACCGGCGCCGGCCTCGA
AAAGCACACGGCCTCGAAGATTGCCTGGGCGACGCTTGTCGGCTCGGTCCTGCTCACCTTGCTGATCTGGATCGCCGGCT
ACATGGCGCGAGGAGCCTGA

Upstream 100 bases:

>100_bases
CATGCGACGCGCTTTGGATTCTTGGTTTGTGCATGCCGCCCTCCCAAAACCGAGGTCACTTTTGGGCGACATGCACGAAG
ACGCCGAACCTGGGGGAGCC

Downstream 100 bases:

>100_bases
TCATGAGCGGCAAGAACAGTACCGACATGCGCACGCCGCTGGCGAAAGTCCGCGGACTCGGCTCCGCCCGCGAGGGCACC
GGCCATTTCTGGCGCCAGCG

Product: succinate dehydrogenase membrane anchor subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSKSPATREFARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAFGTWLGRLIL
FGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIWIAGYMARGA

Sequences:

>Translated_139_residues
MSKSPATREFARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAFGTWLGRLIL
FGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIWIAGYMARGA
>Mature_138_residues
SKSPATREFARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAFGTWLGRLILF
GYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIWIAGYMARGA

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=126, Percent_Identity=30.952380952381, Blast_Score=59, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15498; Mature: 15366

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSPATREFARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASS
CCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
QATFDWVNWAFGTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GSVLLTLLIWIAGYMARGA
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKSPATREFARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASS
CCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
QATFDWVNWAFGTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GSVLLTLLIWIAGYMARGA
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA