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The map label for this gene is sdhD [H]

Identifier: 13473608

GI number: 13473608

Start: 3401026

End: 3401424

Strand: Reverse

Name: sdhD [H]

Synonym: mll4265

Alternate gene names: 13473608

Gene position: 3401424-3401026 (Counterclockwise)

Preceding gene: 13473609

Following gene: 13473607

Centisome position: 48.34

GC content: 64.16

Gene sequence:

>399_bases
ATGAGCGGCAAGAACAGTACCGACATGCGCACGCCGCTGGCGAAAGTCCGCGGACTCGGCTCCGCCCGCGAGGGCACCGG
CCATTTCTGGCGCCAGCGCCTGACCGCCATCGCCAACATCCCGCTGACGCTGTTCTTCGTCGGGTTCCTGATCGCGCTCA
ACGGCGCCGGCTATGCGGAAGTGCGCGCGGCGCTCGCCAATCCGTTCGTGGGGCTGATGCTGGCCCTGGTGCTGATCTCC
GGGCTCATCCATATGCGGCTCGGCATGCAGGTGATCATCGAGGATTACATCACCAGCGAAGGCCTGAAGCTGGCGACGAT
CGCGCTCAACACATTTTTCACTGTAGCGGTCGGCGTCGCCTCGATCTTCGCCCTGCTCAAGCTGGCATTCGGAGGCTGA

Upstream 100 bases:

>100_bases
AGCACACGGCCTCGAAGATTGCCTGGGCGACGCTTGTCGGCTCGGTCCTGCTCACCTTGCTGATCTGGATCGCCGGCTAC
ATGGCGCGAGGAGCCTGATC

Downstream 100 bases:

>100_bases
GTTGGCCAAGGACGCGAAATCAGCCAAAATGGCAGGCTATAATTTTGTCGACCACAAATTCGATGTGGTGGTGGTCGGCG
CCGGGGGTGCGGGCCTGCGT

Product: succinate dehydrogenase cytochrome b small subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSGKNSTDMRTPLAKVRGLGSAREGTGHFWRQRLTAIANIPLTLFFVGFLIALNGAGYAEVRAALANPFVGLMLALVLIS
GLIHMRLGMQVIIEDYITSEGLKLATIALNTFFTVAVGVASIFALLKLAFGG

Sequences:

>Translated_132_residues
MSGKNSTDMRTPLAKVRGLGSAREGTGHFWRQRLTAIANIPLTLFFVGFLIALNGAGYAEVRAALANPFVGLMLALVLIS
GLIHMRLGMQVIIEDYITSEGLKLATIALNTFFTVAVGVASIFALLKLAFGG
>Mature_131_residues
SGKNSTDMRTPLAKVRGLGSAREGTGHFWRQRLTAIANIPLTLFFVGFLIALNGAGYAEVRAALANPFVGLMLALVLISG
LIHMRLGMQVIIEDYITSEGLKLATIALNTFFTVAVGVASIFALLKLAFGG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14040; Mature: 13909

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKNSTDMRTPLAKVRGLGSAREGTGHFWRQRLTAIANIPLTLFFVGFLIALNGAGYAE
CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
VRAALANPFVGLMLALVLISGLIHMRLGMQVIIEDYITSEGLKLATIALNTFFTVAVGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SIFALLKLAFGG
HHHHHHHHHCCC
>Mature Secondary Structure 
SGKNSTDMRTPLAKVRGLGSAREGTGHFWRQRLTAIANIPLTLFFVGFLIALNGAGYAE
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
VRAALANPFVGLMLALVLISGLIHMRLGMQVIIEDYITSEGLKLATIALNTFFTVAVGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SIFALLKLAFGG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA