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The map label for this gene is abgR [H]

Identifier: 13472081

GI number: 13472081

Start: 1819075

End: 1819989

Strand: Reverse

Name: abgR [H]

Synonym: mll2263

Alternate gene names: 13472081

Gene position: 1819989-1819075 (Counterclockwise)

Preceding gene: 13472083

Following gene: 13472079

Centisome position: 25.87

GC content: 68.52

Gene sequence:

>915_bases
ATGCGCATGAACATCCATGATCTCGAAGCCTTCATCGCTGTGGTGGAAACCGGCTCGATCGTCGGCGCCTCGGCCAGGCT
CAACCTCACCCAGCCGGGCGTCACGCGCCGCATCCAGAATCTCGAGGATGGGCTGGCGACAGCGCTGCTCGACCGCCAGT
CGAAGCCGCTGAAGCCGACGGCGTCCGGGCGCGAAGCCTATGAGCATGGAAGGCGGGTGCTGCGCTCGCTGGAGGATCTC
AGGGCGGGCGTGTCGCCGCAAGGCGAGGTCAAGGGCGAGTTCCGCCTGGGCGTCATGCCCTATCTCTCCGACGCGGCACT
TGCGCTGCCGCTCGACACTCTGCGCGCCGCCTTTCCGCAACTGACGCTGCGCATCACCTCAGGCTGGTCGCCAAGGCTGG
TTGAGCAGGTGGCGCGCAGCGAGCTCGACGCCGTGGCGGTGTGCCTCGCCGAAGGCCTGGCGCCGCCGGACGAGCTGGTC
TGCGACGATCTCGGCGCGCAATCGGTGCTGCTGGTCGCATCCCCCAGCCTCGGCGTGCCGAACCCGGCGAAGCTCGCCGA
CCTGTCGCGCTTTGCCTGGGTGATGAACGAAAACGGCTGCGGGTTTCGCGCCTTCATCCGCCAGAGTTTCGAGGCGGCAA
GGCTGCCATTCCAGGTCGGGGTGGAGGCGCTCAGCGTCGACCTCAGAATGTCGCTGGTGGCGCGCGGCCATGGCATCGGC
ATCGTCACGCCCGGCGCCTTCGCCGACAGCCGCTGGCGCGACAAGGTGGAGGTCATCGACTGTCCCGACTTCAAACCGCA
AGTGCGCGCCTGGCTGCTGCACCGCCCGCCCGCCGGACGGCTCGCCGGGCCGATCGCGCTGTTCCGCGACGCGCTGATCG
ACGGGCTGAAAGTGCCGATGCCTCTGGTGTCATAG

Upstream 100 bases:

>100_bases
ATCAGTCATGGAGTCCTCAGGAAGTTGCATATTGCTTGAGGACTTTATGCCGAAGCATTATCATGCTACAATTCAATCAA
TTCGATAATCACTATGCGAG

Downstream 100 bases:

>100_bases
CTGGCTGACGACCAGCTGCCTGTACGCCTTCTACCACTCGCAATGGCGGTCGGCACCGCCATAGTGCGAAGGCAATGGAA
CAGGGAGACAGCACCCGATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRMNIHDLEAFIAVVETGSIVGASARLNLTQPGVTRRIQNLEDGLATALLDRQSKPLKPTASGREAYEHGRRVLRSLEDL
RAGVSPQGEVKGEFRLGVMPYLSDAALALPLDTLRAAFPQLTLRITSGWSPRLVEQVARSELDAVAVCLAEGLAPPDELV
CDDLGAQSVLLVASPSLGVPNPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLRMSLVARGHGIG
IVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFRDALIDGLKVPMPLVS

Sequences:

>Translated_304_residues
MRMNIHDLEAFIAVVETGSIVGASARLNLTQPGVTRRIQNLEDGLATALLDRQSKPLKPTASGREAYEHGRRVLRSLEDL
RAGVSPQGEVKGEFRLGVMPYLSDAALALPLDTLRAAFPQLTLRITSGWSPRLVEQVARSELDAVAVCLAEGLAPPDELV
CDDLGAQSVLLVASPSLGVPNPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLRMSLVARGHGIG
IVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFRDALIDGLKVPMPLVS
>Mature_304_residues
MRMNIHDLEAFIAVVETGSIVGASARLNLTQPGVTRRIQNLEDGLATALLDRQSKPLKPTASGREAYEHGRRVLRSLEDL
RAGVSPQGEVKGEFRLGVMPYLSDAALALPLDTLRAAFPQLTLRITSGWSPRLVEQVARSELDAVAVCLAEGLAPPDELV
CDDLGAQSVLLVASPSLGVPNPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLRMSLVARGHGIG
IVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFRDALIDGLKVPMPLVS

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=241, Percent_Identity=28.2157676348548, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=26.8551236749117, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=25.2, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=284, Percent_Identity=26.056338028169, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=245, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789440, Length=187, Percent_Identity=27.807486631016, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=193, Percent_Identity=25.9067357512953, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=24.8979591836735, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788481, Length=279, Percent_Identity=22.5806451612903, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32864; Mature: 32864

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMNIHDLEAFIAVVETGSIVGASARLNLTQPGVTRRIQNLEDGLATALLDRQSKPLKPT
CCCCHHHHHHHHHHHHCCCEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ASGREAYEHGRRVLRSLEDLRAGVSPQGEVKGEFRLGVMPYLSDAALALPLDTLRAAFPQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHCCCHHHCCHHHHHHHCCC
LTLRITSGWSPRLVEQVARSELDAVAVCLAEGLAPPDELVCDDLGAQSVLLVASPSLGVP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCC
NPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLRMSLVARGHGIG
CCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCE
IVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFRDALIDGLKVPM
EECCCCCCCCCCCCCEEEEECCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
PLVS
CCCC
>Mature Secondary Structure
MRMNIHDLEAFIAVVETGSIVGASARLNLTQPGVTRRIQNLEDGLATALLDRQSKPLKPT
CCCCHHHHHHHHHHHHCCCEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ASGREAYEHGRRVLRSLEDLRAGVSPQGEVKGEFRLGVMPYLSDAALALPLDTLRAAFPQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHCCCHHHCCHHHHHHHCCC
LTLRITSGWSPRLVEQVARSELDAVAVCLAEGLAPPDELVCDDLGAQSVLLVASPSLGVP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCC
NPAKLADLSRFAWVMNENGCGFRAFIRQSFEAARLPFQVGVEALSVDLRMSLVARGHGIG
CCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCE
IVTPGAFADSRWRDKVEVIDCPDFKPQVRAWLLHRPPAGRLAGPIALFRDALIDGLKVPM
EECCCCCCCCCCCCCEEEEECCCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
PLVS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]