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The map label for this gene is rbsC [H]

Identifier: 13471992

GI number: 13471992

Start: 1744257

End: 1745273

Strand: Reverse

Name: rbsC [H]

Synonym: mll2145

Alternate gene names: 13471992

Gene position: 1745273-1744257 (Counterclockwise)

Preceding gene: 13471993

Following gene: 13471990

Centisome position: 24.8

GC content: 67.35

Gene sequence:

>1017_bases
ATGAGCATCGCCGAAGAGCAGAGCCAGCGCGGCGGCGCGACGATCGCGCGGCTGCTGATGAGTTTCGGGCCGCTGCTGTT
CCTGGCGGCGCTGGTCGTCGTCTTCACCGTTTTGAAGCCGAGCTTCATCGACCCGATCAATCTGTTCAACATCACGCGGC
AGATCTCGATCACCGGGCTGATCGCGCTCGGCATGACCTTCGTCATCCTCACCGCCGGTATCGACCTCTCGGTCGGCTCG
CTGCTGGCCTTCTGCGGCATGGTCGCCGCCGTCGTCGCCAAGGGCGGTGCTGCCAACACGCTGTCGCTGTCGACCTCAGG
CACGCAGGGCTATGGCTGGTTCGCGGCGCTGCTCGCCGCCGTCATCGTCGGCGCCGCCGCCGGCGGCGTGCAGGGGCTTG
CCATCACCCGCCTGAAAGTGCCGCCCTTCGTCGTCACGCTGGGCGGGCTTACGGTGTTTCGCGGGCTGACGCTGACCATC
TCCAATGGCGGCCCGATCTCGGGCTTCGACGCCTCGATGCGCTGGTTCGGCACGGGGCTGATCGGCCCGGTGCCGGTCCC
GGCGATCATCTTCGCCGTCGCCGCGATCCTGTGCCACATCGTGCTGCGCTACACGCGCTATGGCCGCGCCGTCTACGCCG
TCGGCGGCAATGCCGAGGCCGCACGGCTGTCGGGCCTGCGCGTCGACCGCATCCTGGTCTCGGTCTATGTCATCGTCGGC
TTCTTCGCCGGGCTCGCCGCCTTCGTGCTGTCGGCGCGGCTCAATTCCTCGGAAGCGGTCGCCGGCATCGGCTATGAGCT
GACGGTGATCTCCGCCGTCGTCATCGGCGGCACCTCGCTGTTCGGTGGCATCGGCTCGGTCGGCGGCACGGTGGTGGGCG
CGGCGCTAATCGGCGTGCTGCAGAACGGGCTGCAGTTCAACAATGTGTCGTCCTACACGCAAAGCATCGTGATTGGGCTC
ATCCTGATCCTGGCGGTGGCGTTTGACCGATGGCTGAAGTCGCGGGTGCGAAGGTAG

Upstream 100 bases:

>100_bases
AAAAACTGATGGAACTGATGGCGCTCGACAAGCAGGATGCTCTTGGGCAAGACGCGCTTGGGCAAGACGCGCTTGGGCAG
GATGCGGAGGATCAGGCACG

Downstream 100 bases:

>100_bases
GGGCGAAAGGTCTGCGCGCCTCGCACCAGCGCATCTACCCTGGCAACTTCTCCTCAATAATCCGCGCCGAGCCCGGCACC
AGGTGCCCGGCCTGATCGAA

Product: permease protein of ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSIAEEQSQRGGATIARLLMSFGPLLFLAALVVVFTVLKPSFIDPINLFNITRQISITGLIALGMTFVILTAGIDLSVGS
LLAFCGMVAAVVAKGGAANTLSLSTSGTQGYGWFAALLAAVIVGAAAGGVQGLAITRLKVPPFVVTLGGLTVFRGLTLTI
SNGGPISGFDASMRWFGTGLIGPVPVPAIIFAVAAILCHIVLRYTRYGRAVYAVGGNAEAARLSGLRVDRILVSVYVIVG
FFAGLAAFVLSARLNSSEAVAGIGYELTVISAVVIGGTSLFGGIGSVGGTVVGAALIGVLQNGLQFNNVSSYTQSIVIGL
ILILAVAFDRWLKSRVRR

Sequences:

>Translated_338_residues
MSIAEEQSQRGGATIARLLMSFGPLLFLAALVVVFTVLKPSFIDPINLFNITRQISITGLIALGMTFVILTAGIDLSVGS
LLAFCGMVAAVVAKGGAANTLSLSTSGTQGYGWFAALLAAVIVGAAAGGVQGLAITRLKVPPFVVTLGGLTVFRGLTLTI
SNGGPISGFDASMRWFGTGLIGPVPVPAIIFAVAAILCHIVLRYTRYGRAVYAVGGNAEAARLSGLRVDRILVSVYVIVG
FFAGLAAFVLSARLNSSEAVAGIGYELTVISAVVIGGTSLFGGIGSVGGTVVGAALIGVLQNGLQFNNVSSYTQSIVIGL
ILILAVAFDRWLKSRVRR
>Mature_337_residues
SIAEEQSQRGGATIARLLMSFGPLLFLAALVVVFTVLKPSFIDPINLFNITRQISITGLIALGMTFVILTAGIDLSVGSL
LAFCGMVAAVVAKGGAANTLSLSTSGTQGYGWFAALLAAVIVGAAAGGVQGLAITRLKVPPFVVTLGGLTVFRGLTLTIS
NGGPISGFDASMRWFGTGLIGPVPVPAIIFAVAAILCHIVLRYTRYGRAVYAVGGNAEAARLSGLRVDRILVSVYVIVGF
FAGLAAFVLSARLNSSEAVAGIGYELTVISAVVIGGTSLFGGIGSVGGTVVGAALIGVLQNGLQFNNVSSYTQSIVIGLI
LILAVAFDRWLKSRVRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=42.4050632911392, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=37.6506024096386, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=34.1463414634146, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=34.4615384615385, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=36.1204013377926, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=48.0916030534351, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787794, Length=337, Percent_Identity=30.2670623145401, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788471, Length=317, Percent_Identity=32.807570977918, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=34.469696969697, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787793, Length=306, Percent_Identity=28.7581699346405, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34695; Mature: 34563

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAEEQSQRGGATIARLLMSFGPLLFLAALVVVFTVLKPSFIDPINLFNITRQISITGL
CCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
IALGMTFVILTAGIDLSVGSLLAFCGMVAAVVAKGGAANTLSLSTSGTQGYGWFAALLAA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
VIVGAAAGGVQGLAITRLKVPPFVVTLGGLTVFRGLTLTISNGGPISGFDASMRWFGTGL
HHHHHHCCCCCCEEEEEEECCCCEEEHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHCCC
IGPVPVPAIIFAVAAILCHIVLRYTRYGRAVYAVGGNAEAARLSGLRVDRILVSVYVIVG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHHH
FFAGLAAFVLSARLNSSEAVAGIGYELTVISAVVIGGTSLFGGIGSVGGTVVGAALIGVL
HHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHH
QNGLQFNNVSSYTQSIVIGLILILAVAFDRWLKSRVRR
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIAEEQSQRGGATIARLLMSFGPLLFLAALVVVFTVLKPSFIDPINLFNITRQISITGL
CCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
IALGMTFVILTAGIDLSVGSLLAFCGMVAAVVAKGGAANTLSLSTSGTQGYGWFAALLAA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
VIVGAAAGGVQGLAITRLKVPPFVVTLGGLTVFRGLTLTISNGGPISGFDASMRWFGTGL
HHHHHHCCCCCCEEEEEEECCCCEEEHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHCCC
IGPVPVPAIIFAVAAILCHIVLRYTRYGRAVYAVGGNAEAARLSGLRVDRILVSVYVIVG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHHH
FFAGLAAFVLSARLNSSEAVAGIGYELTVISAVVIGGTSLFGGIGSVGGTVVGAALIGVL
HHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHH
QNGLQFNNVSSYTQSIVIGLILILAVAFDRWLKSRVRR
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]