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The map label for this gene is soxB [H]

Identifier: 13471330

GI number: 13471330

Start: 1070877

End: 1072136

Strand: Direct

Name: soxB [H]

Synonym: mlr1273

Alternate gene names: 13471330

Gene position: 1070877-1072136 (Clockwise)

Preceding gene: 13471328

Following gene: 13471331

Centisome position: 15.22

GC content: 64.37

Gene sequence:

>1260_bases
ATGGCAGAGTACTCGGCCTTTTCGCTGCTTGCGAACGCGCTCAAGGGAAACAGGGACTGGAAGCCGGCCTGGCGCAAGCC
CGACCCGAAGGCTTCCTATGATGTCATCATCATTGGTGGCGGCGGCCACGGGCTGGCGACCGCCTATTATCTGGCCAAGG
AACACGGCATCACCAATGTCGCCGTGCTGGAAAAGGGCTGGCTCGGCTCCGGCAATGTCGGCCGCAACACCACGGCCGTG
CGCTCGAACTATCTGCTGCCCGCCAATACCCGCTTCTACGAACATTCGATGAAGATGTGGGAAGGCCTGTCGCACGAGCT
CAACTATAACGTCATGTTCTCGCAACGTGGCTGCCTGAACCTGGCGCACACGCCGGCCCAGTTCGACGACTATGCAAGGC
GCGGCAACGCCATGCGCCATCTCGGCGTCGATGCCGAACTGATGACGCCGGCGCAGATCAAACGCCTGATCCCGGCGATC
GATATCTCCGGGGATGCACGCTTTCCCGTGGTCGGCGGCCTGATGCAGCGGCGCGCCGGCACCGCCCGCCACGATGCGGT
GGCCTGGGGCTATGCGCGCGGCGCCGACCGGCGCGGCGTCGATATCATCGAGAATTGCGAGGTCACCGGCTTCCTGCGCG
ATGGCGACCGCATCACCGGCGTCACCACGTCGCGCGGCGATATCAGGGCCAAAAAGGTGGCGGTCGCGGTGGCCGGCAGC
ACCGGACGCGTCATGCAATTGGCCGGCATCGAGACGATGCCGATCGAGAGCCATGTGCTGCAGGCCTTCGTGACGGAATC
GCTAAAACCCTTCATCGACACGGTCGTGACCTTCGGCATGGGCCATTTCTACATGTCGCAGTCCGACAAGGGCGGCCTTG
TCTATGGCGGCGATATCGACGGCTACAACAGCTACGCCCAGCGCGGCAACCTGCCCATCGTCGACGAGGTGATGAGCGAG
ATGCTGGCACTGTTCCCGGGCCTTGCCCGCGTGCGCATGCTGCGTTCGTGGGGCGGTGTGTGCGACATGTCGATGGACGG
TTCGCCGATCATCACCACCGGCCCCCTGCCCGGCATGTATCTCAATTGCGGCTGGTGCTATGGCGGCTTCAAGGCGACGC
CGGCCTCCGGCTGGACCTTTGCCTGGACCATCGCCAAGGACGAGCCGCACGATTTCAACGCGCCGTTCACCCTCGACCGC
TTCCACCGCGGCCTCGTCATCGACGACAAGGGCCAGGGCGCGAATCCGCGGCTCCATTAG

Upstream 100 bases:

>100_bases
CATCGCGGCGTCGGCCAGTCGAAAGGCCATGGCGCAATATTGGCTTTGCGGATGCGGCCTGCTCTATAGTCTGCCGCATC
GCCCGAACCGGATGACAATG

Downstream 100 bases:

>100_bases
GAAACATCCTGTGCTGATCACCTGCCCCTATTGCGGCCCGCGCGACGTCATCGAGTTCACCTATCAGGGTGACGGCAACC
GCGAGCGTCCCGACCCCGCC

Product: sarcosine oxidase beta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MAEYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNVAVLEKGWLGSGNVGRNTTAV
RSNYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLNLAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAI
DISGDARFPVVGGLMQRRAGTARHDAVAWGYARGADRRGVDIIENCEVTGFLRDGDRITGVTTSRGDIRAKKVAVAVAGS
TGRVMQLAGIETMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDIDGYNSYAQRGNLPIVDEVMSE
MLALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMYLNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDR
FHRGLVIDDKGQGANPRLH

Sequences:

>Translated_419_residues
MAEYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNVAVLEKGWLGSGNVGRNTTAV
RSNYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLNLAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAI
DISGDARFPVVGGLMQRRAGTARHDAVAWGYARGADRRGVDIIENCEVTGFLRDGDRITGVTTSRGDIRAKKVAVAVAGS
TGRVMQLAGIETMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDIDGYNSYAQRGNLPIVDEVMSE
MLALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMYLNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDR
FHRGLVIDDKGQGANPRLH
>Mature_418_residues
AEYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNVAVLEKGWLGSGNVGRNTTAVR
SNYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLNLAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAID
ISGDARFPVVGGLMQRRAGTARHDAVAWGYARGADRRGVDIIENCEVTGFLRDGDRITGVTTSRGDIRAKKVAVAVAGST
GRVMQLAGIETMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDIDGYNSYAQRGNLPIVDEVMSEM
LALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMYLNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDRF
HRGLVIDDKGQGANPRLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=386, Percent_Identity=23.3160621761658, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI197927446, Length=400, Percent_Identity=24, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI21361378, Length=400, Percent_Identity=24, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1787438, Length=327, Percent_Identity=21.7125382262997, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20130091, Length=383, Percent_Identity=23.4986945169713, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45803; Mature: 45672

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNV
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE
AVLEKGWLGSGNVGRNTTAVRSNYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLN
EEEECCCCCCCCCCCCCHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
LAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAIDISGDARFPVVGGLMQRRAG
ECCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHCCEEECCCCCCCCHHHHHHHHHCC
TARHDAVAWGYARGADRRGVDIIENCEVTGFLRDGDRITGVTTSRGDIRAKKVAVAVAGS
CCCHHHEEEHHHCCCCCCCCCCHHCCEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECC
TGRVMQLAGIETMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDID
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCC
GYNSYAQRGNLPIVDEVMSEMLALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMY
CCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCE
LNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDRFHRGLVIDDKGQGANPRLH
EEEEEEECCEECCCCCCCEEEEEEECCCCCCCCCCEEHHHHCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
AEYSAFSLLANALKGNRDWKPAWRKPDPKASYDVIIIGGGGHGLATAYYLAKEHGITNV
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEE
AVLEKGWLGSGNVGRNTTAVRSNYLLPANTRFYEHSMKMWEGLSHELNYNVMFSQRGCLN
EEEECCCCCCCCCCCCCHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
LAHTPAQFDDYARRGNAMRHLGVDAELMTPAQIKRLIPAIDISGDARFPVVGGLMQRRAG
ECCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHCCEEECCCCCCCCHHHHHHHHHCC
TARHDAVAWGYARGADRRGVDIIENCEVTGFLRDGDRITGVTTSRGDIRAKKVAVAVAGS
CCCHHHEEEHHHCCCCCCCCCCHHCCEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECC
TGRVMQLAGIETMPIESHVLQAFVTESLKPFIDTVVTFGMGHFYMSQSDKGGLVYGGDID
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCC
GYNSYAQRGNLPIVDEVMSEMLALFPGLARVRMLRSWGGVCDMSMDGSPIITTGPLPGMY
CCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCE
LNCGWCYGGFKATPASGWTFAWTIAKDEPHDFNAPFTLDRFHRGLVIDDKGQGANPRLH
EEEEEEECCEECCCCCCCEEEEEEECCCCCCCCCCEEHHHHCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]