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The map label for this gene is soxD [H]

Identifier: 13471331

GI number: 13471331

Start: 1072147

End: 1072443

Strand: Direct

Name: soxD [H]

Synonym: msr1274

Alternate gene names: 13471331

Gene position: 1072147-1072443 (Clockwise)

Preceding gene: 13471330

Following gene: 13471332

Centisome position: 15.24

GC content: 64.31

Gene sequence:

>297_bases
GTGCTGATCACCTGCCCCTATTGCGGCCCGCGCGACGTCATCGAGTTCACCTATCAGGGTGACGGCAACCGCGAGCGTCC
CGACCCCGCCTCGCAGAATTTCGAGGCGTGGAACGCCTATGTCTATGACCGGCTGAACCCGGCCGGCGACCACAATGAGA
TCTGGCAGCATTCCGGCGGTTGCCGCGCGCACCTGCGCGTCGTGCGCAACACGCTGACGCATGAGATTTCGAGCGTCGCT
TTCGTGCGCGGTGATCATGCTTCAACCGCGCGCCGCAAGGCGGAGGACAAGGCATGA

Upstream 100 bases:

>100_bases
GATTTCAACGCGCCGTTCACCCTCGACCGCTTCCACCGCGGCCTCGTCATCGACGACAAGGGCCAGGGCGCGAATCCGCG
GCTCCATTAGGAAACATCCT

Downstream 100 bases:

>100_bases
GCCCGCGCCGCACCGACACTGGCGGCCGCATCGACCGGCTGAAGACGATCCGCTTCACCTTCGACGGCGTTGCCTATACC
GGCCATGCCGGCGACACGCT

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MLITCPYCGPRDVIEFTYQGDGNRERPDPASQNFEAWNAYVYDRLNPAGDHNEIWQHSGGCRAHLRVVRNTLTHEISSVA
FVRGDHASTARRKAEDKA

Sequences:

>Translated_98_residues
MLITCPYCGPRDVIEFTYQGDGNRERPDPASQNFEAWNAYVYDRLNPAGDHNEIWQHSGGCRAHLRVVRNTLTHEISSVA
FVRGDHASTARRKAEDKA
>Mature_98_residues
MLITCPYCGPRDVIEFTYQGDGNRERPDPASQNFEAWNAYVYDRLNPAGDHNEIWQHSGGCRAHLRVVRNTLTHEISSVA
FVRGDHASTARRKAEDKA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11115; Mature: 11115

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITCPYCGPRDVIEFTYQGDGNRERPDPASQNFEAWNAYVYDRLNPAGDHNEIWQHSGG
CEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCHHHHCCCC
CRAHLRVVRNTLTHEISSVAFVRGDHASTARRKAEDKA
CHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCC
>Mature Secondary Structure
MLITCPYCGPRDVIEFTYQGDGNRERPDPASQNFEAWNAYVYDRLNPAGDHNEIWQHSGG
CEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCHHHHCCCC
CRAHLRVVRNTLTHEISSVAFVRGDHASTARRKAEDKA
CHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]