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The map label for this gene is glxA [H]

Identifier: 13471313

GI number: 13471313

Start: 1050294

End: 1051295

Strand: Direct

Name: glxA [H]

Synonym: mlr1251

Alternate gene names: 13471313

Gene position: 1050294-1051295 (Clockwise)

Preceding gene: 13471312

Following gene: 13471327

Centisome position: 14.93

GC content: 64.47

Gene sequence:

>1002_bases
GTGAACGCCATCAAGCATCCGATCAAGCGATCGTTTGTGTTTTTCCTTGTCCCCGACTTCACCATGATCGCTTTTGCGAC
CGCACTTGACCCGCTGCGCTCCGCCAACCGCATGCTCGGCTACGAGGCCTATCGTTGGCGCCTCGCCAGCATCGACGGCA
AGCCGGTGCGCGCCTCGAACGGCGTCGAATGCGCGGTCAACACCTCGCTGGAGGAAGAACGCAAGAAGATGGCAGGCCCC
GACCGGCCGAACATGGCCATCGTCTGCAGCGGCGTCAATGTCGAGCGCTACCAGAACAAATCGGCCTTCGCCTGGCTGCG
CGAGGAGTACAATCGTGGCGTCGCCGTTGGCGGCCTGTGCACCGGCGCGCACATCCTTGCCGCCGCCGGCCTCTTGTCCA
ACAAGCGCTGCGCCATCCATTGGGAAAACCTGCCGGGCTTTTCCGAGGCGTTCCCGAAGGCCAATGTCTTTGCCGACCTC
TTTGAGGTCGACCAGAACATCTATACCTGCGCCGGCGGCACCGCCGCGCTCGATATGATGCTGAAGCTGATCGGCGACGA
TTTCGACGAGAGCCTCGTCAACCGGGTCTGCGAACAGGTGCTGACCGATCGCGTGCGCAGCCCGACCGACCGCCAGCGCC
TGCCGCTGCGCGCCCGCCTCGGCGTGCAGAACTCGAAGGTGCTGACCATCATCGAACTGATGGAAGGCAATCTCTCCGAG
CCGCTGTCGCTGATCGAGATCGCCGACCATGTCGACCTGTCGCGTCGCCAGATCGAGCGCCTGTTCCGCACCGAGATGGG
CCGTTCCCCTGCCCGCTACTATCTGGAGATCCGGCTCGACCGCGCCCGGCACCTGCTGATCCAGTCGTCGATGCCGGTGG
TCGAGGTCGCGGTCGCCTGCGGCTTCGTCTCGGCCTCGCATTTCTCGAAATGCTACCGCGAGCTCTACGCCCGCTCGCCA
CAGCAGGAGCGCGTCGACCGCAAGCAGTTGCTGGCGGCCTGA

Upstream 100 bases:

>100_bases
TCTCGCAAAGGCAGCGTAGCCAATTGACAGCCAAGGTTTTTCCTGATGTCGCTATGCTATTCGCGACATCCTGTTCGCGC
CATGGCCAGATGAGGTTCCC

Downstream 100 bases:

>100_bases
TCCCCCGGATCAGGCTCAGGCCGGCTGCGCCTGCGCCGTGCGCATCGCCTCGACGCGGATGTCCTCGGTCAGCCGCGCTT
TCAGCGCAGAGAATTCCGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNAIKHPIKRSFVFFLVPDFTMIAFATALDPLRSANRMLGYEAYRWRLASIDGKPVRASNGVECAVNTSLEEERKKMAGP
DRPNMAIVCSGVNVERYQNKSAFAWLREEYNRGVAVGGLCTGAHILAAAGLLSNKRCAIHWENLPGFSEAFPKANVFADL
FEVDQNIYTCAGGTAALDMMLKLIGDDFDESLVNRVCEQVLTDRVRSPTDRQRLPLRARLGVQNSKVLTIIELMEGNLSE
PLSLIEIADHVDLSRRQIERLFRTEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYARSP
QQERVDRKQLLAA

Sequences:

>Translated_333_residues
MNAIKHPIKRSFVFFLVPDFTMIAFATALDPLRSANRMLGYEAYRWRLASIDGKPVRASNGVECAVNTSLEEERKKMAGP
DRPNMAIVCSGVNVERYQNKSAFAWLREEYNRGVAVGGLCTGAHILAAAGLLSNKRCAIHWENLPGFSEAFPKANVFADL
FEVDQNIYTCAGGTAALDMMLKLIGDDFDESLVNRVCEQVLTDRVRSPTDRQRLPLRARLGVQNSKVLTIIELMEGNLSE
PLSLIEIADHVDLSRRQIERLFRTEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYARSP
QQERVDRKQLLAA
>Mature_333_residues
MNAIKHPIKRSFVFFLVPDFTMIAFATALDPLRSANRMLGYEAYRWRLASIDGKPVRASNGVECAVNTSLEEERKKMAGP
DRPNMAIVCSGVNVERYQNKSAFAWLREEYNRGVAVGGLCTGAHILAAAGLLSNKRCAIHWENLPGFSEAFPKANVFADL
FEVDQNIYTCAGGTAALDMMLKLIGDDFDESLVNRVCEQVLTDRVRSPTDRQRLPLRARLGVQNSKVLTIIELMEGNLSE
PLSLIEIADHVDLSRRQIERLFRTEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYARSP
QQERVDRKQLLAA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=116, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37457; Mature: 37457

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIKHPIKRSFVFFLVPDFTMIAFATALDPLRSANRMLGYEAYRWRLASIDGKPVRASN
CCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCEECCC
GVECAVNTSLEEERKKMAGPDRPNMAIVCSGVNVERYQNKSAFAWLREEYNRGVAVGGLC
CCEEEECCCHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHCCCEEECCHH
TGAHILAAAGLLSNKRCAIHWENLPGFSEAFPKANVFADLFEVDQNIYTCAGGTAALDMM
HHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHCCCEEEECCHHHHHHHH
LKLIGDDFDESLVNRVCEQVLTDRVRSPTDRQRLPLRARLGVQNSKVLTIIELMEGNLSE
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCCCCEEHHHHHCCCCCC
PLSLIEIADHVDLSRRQIERLFRTEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVAC
CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCHHHHHHHH
GFVSASHFSKCYRELYARSPQQERVDRKQLLAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNAIKHPIKRSFVFFLVPDFTMIAFATALDPLRSANRMLGYEAYRWRLASIDGKPVRASN
CCCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCEECCC
GVECAVNTSLEEERKKMAGPDRPNMAIVCSGVNVERYQNKSAFAWLREEYNRGVAVGGLC
CCEEEECCCHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHCCCEEECCHH
TGAHILAAAGLLSNKRCAIHWENLPGFSEAFPKANVFADLFEVDQNIYTCAGGTAALDMM
HHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHCCCEEEECCHHHHHHHH
LKLIGDDFDESLVNRVCEQVLTDRVRSPTDRQRLPLRARLGVQNSKVLTIIELMEGNLSE
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCCCCEEHHHHHCCCCCC
PLSLIEIADHVDLSRRQIERLFRTEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVAC
CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCHHHHHHHH
GFVSASHFSKCYRELYARSPQQERVDRKQLLAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]