Click here to switch to the map view.

The map label for this gene is cycA [H]

Identifier: 13471158

GI number: 13471158

Start: 882060

End: 882464

Strand: Reverse

Name: cycA [H]

Synonym: mll1048

Alternate gene names: 13471158

Gene position: 882464-882060 (Counterclockwise)

Preceding gene: 13471160

Following gene: 13471157

Centisome position: 12.54

GC content: 56.79

Gene sequence:

>405_bases
ATGGCGATCAGGGGAGGAAATGCCATGCGCGCTCTAGCGTTTTTCGCTGCGGTGTCCGTTACGATCTTCATCGCGCATCC
GTCGCGGGCACAGGATGCCGCGGCTGGTGAGAAGGTCTTCACCAAATGCCAAGTCTGCCACATCGCAAACGAGGACAAGA
ACAAGATCGGCCCGTCGCTGCACGGCGTCATCGGCCGCACGGCCGGTACGCATCCGGATTTTAAATATTCCGATGCCATG
ATTGCGGCAGGCAAATCCGGCGTCAAATGGGACGAGCCAACGCTGACGACCTACCTTCACGATCCCAAGGCCATGGTCAA
AGGCACCAAGATGACGTTTCCCGGTCTCAAGAACGATGCAGACGTGGCCAACGTCATTGCCTATCTGAAAACGTTCTCCA
AGTGA

Upstream 100 bases:

>100_bases
CTTGGCTTTTTCTACCCGCCGCCTGGATTCCATGGTATGTTGGTAGCGCAATTCCACTGGGGAGGGATATTCTGCCCAGG
CGCGATCGTCCGAGGCATAA

Downstream 100 bases:

>100_bases
CCTGGCTCCTCCGCCATCCATCCAACGCCTTGTTTTACCGTGATCTTATCGAGATCAAAGGACGCGGGCGTTCGGTGCGG
GATCATCGCCCGGCTTGCCT

Product: cytochrome c

Products: NA

Alternate protein names: Cytochrome c550 [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAIRGGNAMRALAFFAAVSVTIFIAHPSRAQDAAAGEKVFTKCQVCHIANEDKNKIGPSLHGVIGRTAGTHPDFKYSDAM
IAAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDADVANVIAYLKTFSK

Sequences:

>Translated_134_residues
MAIRGGNAMRALAFFAAVSVTIFIAHPSRAQDAAAGEKVFTKCQVCHIANEDKNKIGPSLHGVIGRTAGTHPDFKYSDAM
IAAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDADVANVIAYLKTFSK
>Mature_133_residues
AIRGGNAMRALAFFAAVSVTIFIAHPSRAQDAAAGEKVFTKCQVCHIANEDKNKIGPSLHGVIGRTAGTHPDFKYSDAMI
AAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDADVANVIAYLKTFSK

Specific function: Plays a role in bacteroid respiration under conditions of oxygen limitation. Required for electron-transfer during denitrification [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=102, Percent_Identity=44.1176470588235, Blast_Score=83, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=106, Percent_Identity=45.2830188679245, Blast_Score=85, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=44.5544554455446, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=99, Percent_Identity=43.4343434343434, Blast_Score=86, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=104, Percent_Identity=41.3461538461538, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17137204, Length=102, Percent_Identity=48.0392156862745, Blast_Score=90, Evalue=4e-19,
Organism=Drosophila melanogaster, GI17137228, Length=107, Percent_Identity=43.9252336448598, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14340; Mature: 14208

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRGGNAMRALAFFAAVSVTIFIAHPSRAQDAAAGEKVFTKCQVCHIANEDKNKIGPSL
CCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCH
HGVIGRTAGTHPDFKYSDAMIAAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDA
HHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHCCCEEECCCCCCCH
DVANVIAYLKTFSK
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AIRGGNAMRALAFFAAVSVTIFIAHPSRAQDAAAGEKVFTKCQVCHIANEDKNKIGPSL
CCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCH
HGVIGRTAGTHPDFKYSDAMIAAGKSGVKWDEPTLTTYLHDPKAMVKGTKMTFPGLKNDA
HHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHCCCEEECCCCCCCH
DVANVIAYLKTFSK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721713; 12597275 [H]