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The map label for this gene is yqgF [C]

Identifier: 15603735

GI number: 15603735

Start: 2111671

End: 2112093

Strand: Direct

Name: yqgF [C]

Synonym: PM1870

Alternate gene names: 15603735

Gene position: 2111671-2112093 (Clockwise)

Preceding gene: 161723304

Following gene: 15603738

Centisome position: 93.54

GC content: 45.15

Gene sequence:

>423_bases
ATGGGGATGACTGTTCTCGCATTTGATTTTGGTACAAAAAGCATTGGTTGTGCGGTAGGGCAAAGTATTACGGGCACGGC
TCAGGCATTGCCAGCGTTTAAAGCACAAGATGGCATCCCAAACTGGGATGCGATCGGCAAGTGTTTGGCAGAATGGCAAC
CAGATCGAGTAGTGGTCGGTTTACCGTTAAATATGGATGGTACCGAGCAAGATCTCACAGTAAGGGCAAGAAAATTTGCT
CATCGTTTACATGGGCGTTTTGGCGTGGCAGTTGAATTACAAGATGAACGTTTGACTACGACAGAAGCGCGGGCTGAAAT
CTTTGGACGTGGTGGTTATAAAGCCTTAAACAAAAGCAAAGTAGATGGGATATCGGCGTGCTTAATTCTAGAAAGTTGGT
TTGAAAATCAACAGGTTAAGTAG

Upstream 100 bases:

>100_bases
GTATTTTATTTGATGTGCCTTATGAAGATCGTTGGTTAGAAGCCAATTTATTGTTGGGGATTCAACATCATAATTTTGCA
CACCAAGCGGGACATTGCTA

Downstream 100 bases:

>100_bases
GAAAAATCATCATTTTCAAGAAATTCATAAAAAAACACCGCACTTGATAAAAGTGCGGTGCTTTTTTTTTGCGATGTTAT
TAGCGAATTATGCTTGACCT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MGMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGLPLNMDGTEQDLTVRARKFA
HRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSKVDGISACLILESWFENQQVK

Sequences:

>Translated_140_residues
MGMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGLPLNMDGTEQDLTVRARKFA
HRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSKVDGISACLILESWFENQQVK
>Mature_139_residues
GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVGLPLNMDGTEQDLTVRARKFAH
RLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSKVDGISACLILESWFENQQVK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=70.3703703703704, Blast_Score=203, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PASMU (Q9CJX0)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246809.1
- ProteinModelPortal:   Q9CJX0
- SMR:   Q9CJX0
- GeneID:   1245217
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1870
- NMPDR:   fig|272843.1.peg.1871
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   PMUL272843:PM1870-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15255; Mature: 15123

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVG
CCCEEEEEECCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
LPLNMDGTEQDLTVRARKFAHRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSK
ECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC
VDGISACLILESWFENQQVK
CCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GMTVLAFDFGTKSIGCAVGQSITGTAQALPAFKAQDGIPNWDAIGKCLAEWQPDRVVVG
CCEEEEEECCCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
LPLNMDGTEQDLTVRARKFAHRLHGRFGVAVELQDERLTTTEARAEIFGRGGYKALNKSK
ECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC
VDGISACLILESWFENQQVK
CCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100