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The map label for this gene is secD [H]

Identifier: 15602092

GI number: 15602092

Start: 253474

End: 255324

Strand: Reverse

Name: secD [H]

Synonym: PM0227

Alternate gene names: 15602092

Gene position: 255324-253474 (Counterclockwise)

Preceding gene: 15602093

Following gene: 15602091

Centisome position: 11.31

GC content: 43.0

Gene sequence:

>1851_bases
ATGTTAAATCGTTACCCTCTTTGGAAGAACCTAATGGTGATCCTCGTGATCGCCATTGGCGTTTTATACTCTCTTCCAAA
TCTTTATGGTGAAGATCCCGCAGTGCAAATTTCTGGCACCCGAGGACAAGAAGCCAATGCTCAAATATTTAGTGAAGTCC
AAACTTTATTAAATCAAAACAACTTAGAAACCAAATCGATTATTCTAGAAAATGGCTCTATTCTTGCTCGTTTTCATAAT
ACCGATGATCAATTACTTGCCAAAGATAAACTGTCTGAAAAATTAGGTAATGGCTATTCTGTTGCCTTAAACCTTGCGCC
GGCAACACCGAAGTGGCTCACTTCAGTTGGCGCTTATCCGATGAAATGGGGATTAGACTTACGTGGTGGTGTCCGCTTCT
TAATGGAAGTGGATATGAAATCGGCTTTACATAAACGTCAAGAACAATTACAAGACAACCTGCGTACCCAATTACGTAAA
GAAAAATATCAGTATACAGGGATTAAATCCGCTGAAAATTTCAGTACGCTCGTCACCTTATTAAAACCAGAACAACTGGA
TGAGGTACAACGTTTTTTACGTAAACAGCATCATAATTTAGAGATTAAAAGCGTTTCAGACAATACCTTAGCGTTAACCC
TTTCTGAAGCCGCACTCAATGAATCTCGTGAAAGTGCTATTGAGCAAAACTTGACGATTTTACGTAAACGTGTGTCTGAA
TTGGGTGTGTCTGAAGCAGTGATTCAACGTCAAGGCGCTGAACGTATTGTGGTTGAGTTACCTGGTGTACAAGATACCGC
GCGTGCGAAAGAAATCCTAGGCGCAACTGCGACGTTGGAATTCCGTTTAGTCAATGAAAATGTCAATCTTGATTCGGCAA
CACGCGGCTTTGTACCAAATGATTCAGAAGTAAAATTGGATCGCAATGGTCGCCCAGTTGTCCTGTATAAACGTGCCGTA
CTCGGTGGTGAACATATTACTAACGCCAGTTCAGGGCTAGATCAACAAACTTCCCGTCCGCAAGTCAGCGTGACCTTAGA
CAGTGAAGGTGGCGAGATCATGTCACAAGCTACCCGTTTGAATCTGAAAAAACCGATGGCGACGTTATATGTTGAATATA
AAGACAGCGGTAAGAAAGATGAAAATGGCAAAGCGATCTTAGAAAAACACGAGGAAGTCATTAACGTCGCGACGATTCAA
GGCCGTTTTGGTAGCCAATTCCAAATTACCGGCATTGATAGCCCTGCAGAAGCGTTAAATCTTGCAGTGTTACTCCGTTC
TGGTGCCTTAATTGCCCCCATTCAAATTGTCGAAGAACGCACGATTGGACCATCACTGGGGGCTGAAAACGTACGCCAAG
GTTTAGAGGCCAGTTTCTGGGGCTTACTCGCCGTCATTATTTTCATGACACTTTACTATCGTAAATTTGGTTTGATCGCT
AATATTGCGTTGATTGCGAATATTGTTTTAGTGGTTGGTTTAATGTCATTACTGCCGGGCGCCACCTTGTCAATGCCAGG
AATTGCCGGGATCGTGCTATCCGTTGGGATGTCCATTGATGCTAACGTACTGATCTTTGAACGTATCAAAGAAGAAATCC
GTAATGGTAGACCTATTCAGCAAGCCATTCACGAAGGCTATTCTGGCGCATTCACCAGTATTTTTGATGCAAACTTAACC
ACCATTCTCACCTCCGTGATTCTTTATGCCGTGGGTGCAGGTCCAGTGAAAGGCTTTGCAATTACACTTGCCCTTGGGGT
AGGGATTTCCATGTTTACCGCCATTGTCGGCACACGTGCAATCGTCAACTTCTTGTACGGCGGTAAACGTATAAACAAAT
TGTCAATTTAG

Upstream 100 bases:

>100_bases
AATGAGACAACCGAAGTCACCATCAACCGTAACTACGTTGTGGCTGTGTTACCAAAAGGCTCATTAAAATCTTAATTTTT
CATTCCTAAAAGGGAAAACT

Downstream 100 bases:

>100_bases
CGAGGATATTGTGAGTTTATTTACAGATAAAAAAGATGCGCCTGAATTGAGCAATATTAAACTACCCTATCGCTTAATTC
ACTTTATGGCTCACCGTAAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHN
TDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRK
EKYQYTGIKSAENFSTLVTLLKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE
LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAV
LGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQ
GRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA
NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLT
TILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI

Sequences:

>Translated_616_residues
MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHN
TDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRK
EKYQYTGIKSAENFSTLVTLLKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE
LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAV
LGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQ
GRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA
NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLT
TILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI
>Mature_616_residues
MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHN
TDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRK
EKYQYTGIKSAENFSTLVTLLKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE
LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAV
LGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQ
GRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA
NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLT
TILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=616, Percent_Identity=62.5, Blast_Score=785, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67403; Mature: 67403

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQN
CCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
NLETKSIILENGSILARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYP
CCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCC
MKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFSTLVTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE
HCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPN
CCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCC
DSEVKLDRNGRPVVLYKRAVLGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRL
CCCEEECCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
NLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQGRFGSQFQITGIDSPAEALN
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCEEEEECCCCHHHHHH
LAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA
HHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
QAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRA
HHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IVNFLYGGKRINKLSI
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQN
CCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
NLETKSIILENGSILARFHNTDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYP
CCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCC
MKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKYQYTGIKSAENFSTLVTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE
HCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPN
CCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCC
DSEVKLDRNGRPVVLYKRAVLGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRL
CCCEEECCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
NLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQGRFGSQFQITGIDSPAEALN
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCEEEEECCCCHHHHHH
LAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA
HHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
QAIHEGYSGAFTSIFDANLTTILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRA
HHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IVNFLYGGKRINKLSI
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]