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The map label for this gene is rbsR

Identifier: 15602016

GI number: 15602016

Start: 178583

End: 179596

Strand: Reverse

Name: rbsR

Synonym: PM0151

Alternate gene names: 15602016

Gene position: 179596-178583 (Counterclockwise)

Preceding gene: 15602017

Following gene: 15601996

Centisome position: 7.96

GC content: 42.01

Gene sequence:

>1014_bases
ATGGCAACTATGAAAGACATCGCAAGGATAGCGAAAGTATCCACGTCAACCGTTTCCCATGTCATTAATAACTCTCGATT
TGTTAGCGATGAAATTCGCGATAAAGTGATGCATGTTGTTAAGGAACTGAATTACACACCTTCCGCCCTCGCACGCAGTC
TAAAAGTCAAAGAAACCAAAACAATCGGCTTATTAGTCACCGCTACCAATAACCCTTTCTTTACTGAAGTCGTCAGCGGC
GTAGAACAATATTGTCACCAGCATCACTATAATTTAATTCTCTCGAACACAGAGGGCGATACGGAGCGCCTGCGCCATAA
TTTACAAACCCTCATTCAAAAGCAAGTAGATGGTTTGTTACTGATGTGTTCCGATGCCCGTATTCAAATTGGTAAAGATT
TGAATGTCAATTTACCCTTTGTGGTAATGGACTGGTGGCCTACAGAAGAAAAAGCGGACAAAATTTACGAAAACTCCGAG
TATGGTGGTTACTTAGCCACTAAGCAGCTGATTGAAAAAGGGCACCAACACATTGCGATTATTACCGGTAATTTAAAAAA
GTCACTTGCACAGAATCGACTAGATGGTTACAAAAAAGCCCTAAAAGAAGCCAATATTCCCTTACGCGAAGACTGTATCA
TTGAAAGCCATTTTGATTTTGAAGGCGGCAAACGCGGTATGGAGAAAGTGCTCGCGTTACAGCCACGCCCAACTGCCGTC
TTTGCTTGTAGTGATAGTATTGCCTTTGGTGCGTATCAAACGGTTTGGCATCAAGGTCTCCATATTCCACAAGACATTTC
TATCATCGGCTACGATAATATTACCTTAGCCGAATATATGTCGCCCCCCCTAACCACGATCAATCAACCTAAAGCGGAAT
TAGGTAAATTAGCCGTAGAAACCTTACTCCAGCGGATCAAAAATCCAACAGCAAAACACCGTACATTATTACTTGAACCT
CAATTAGTTTGGCGAGAATCTGTTAGACAGCTGTATCAAGAAAAACGTGGGTAA

Upstream 100 bases:

>100_bases
TTTTTACAATCACATTAAAATCATGTAGGGGAAACTTACCCCTACTTTTTCACGTTTTCAATGACCTAGCAACATTCGCT
ACACGATAAGAGAAACTACA

Downstream 100 bases:

>100_bases
ATCCCACGTTTTATTTAAGGTGTGAGCTCAACAGGCTTAATAATTTCACTTGGATAACAGCCCAATACTTTTAAATAATG
ACTATATTGTTTTAGCTCGT

Product: RbsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MATMKDIARIAKVSTSTVSHVINNSRFVSDEIRDKVMHVVKELNYTPSALARSLKVKETKTIGLLVTATNNPFFTEVVSG
VEQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQVDGLLLMCSDARIQIGKDLNVNLPFVVMDWWPTEEKADKIYENSE
YGGYLATKQLIEKGHQHIAIITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQPRPTAV
FACSDSIAFGAYQTVWHQGLHIPQDISIIGYDNITLAEYMSPPLTTINQPKAELGKLAVETLLQRIKNPTAKHRTLLLEP
QLVWRESVRQLYQEKRG

Sequences:

>Translated_337_residues
MATMKDIARIAKVSTSTVSHVINNSRFVSDEIRDKVMHVVKELNYTPSALARSLKVKETKTIGLLVTATNNPFFTEVVSG
VEQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQVDGLLLMCSDARIQIGKDLNVNLPFVVMDWWPTEEKADKIYENSE
YGGYLATKQLIEKGHQHIAIITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQPRPTAV
FACSDSIAFGAYQTVWHQGLHIPQDISIIGYDNITLAEYMSPPLTTINQPKAELGKLAVETLLQRIKNPTAKHRTLLLEP
QLVWRESVRQLYQEKRG
>Mature_336_residues
ATMKDIARIAKVSTSTVSHVINNSRFVSDEIRDKVMHVVKELNYTPSALARSLKVKETKTIGLLVTATNNPFFTEVVSGV
EQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQVDGLLLMCSDARIQIGKDLNVNLPFVVMDWWPTEEKADKIYENSEY
GGYLATKQLIEKGHQHIAIITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQPRPTAVF
ACSDSIAFGAYQTVWHQGLHIPQDISIIGYDNITLAEYMSPPLTTINQPKAELGKLAVETLLQRIKNPTAKHRTLLLEPQ
LVWRESVRQLYQEKRG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=51.0574018126888, Blast_Score=342, Evalue=1e-95,
Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=45.6456456456456, Blast_Score=291, Evalue=4e-80,
Organism=Escherichia coli, GI1790369, Length=334, Percent_Identity=35.0299401197605, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1788474, Length=335, Percent_Identity=34.3283582089552, Blast_Score=175, Evalue=5e-45,
Organism=Escherichia coli, GI1789202, Length=333, Percent_Identity=33.9339339339339, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1787580, Length=324, Percent_Identity=30.5555555555556, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=29.5302013422819, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1790715, Length=325, Percent_Identity=26.1538461538462, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786540, Length=319, Percent_Identity=29.4670846394984, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI48994940, Length=318, Percent_Identity=25.4716981132075, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787906, Length=334, Percent_Identity=23.0538922155689, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786268, Length=311, Percent_Identity=23.7942122186495, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789456, Length=340, Percent_Identity=25.5882352941176, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790192, Length=278, Percent_Identity=25.5395683453237, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790689, Length=307, Percent_Identity=21.8241042345277, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSR_PASMU (Q9CPA2)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245088.1
- ProteinModelPortal:   Q9CPA2
- SMR:   Q9CPA2
- GeneID:   1243498
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0151
- NMPDR:   fig|272843.1.peg.151
- HOGENOM:   HBG753640
- OMA:   HAVERYC
- ProtClustDB:   CLSK869986
- BioCyc:   PMUL272843:PM0151-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761
- PRINTS:   PR00036
- SMART:   SM00354

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 38187; Mature: 38056

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00356 HTH_LACI_1; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMKDIARIAKVSTSTVSHVINNSRFVSDEIRDKVMHVVKELNYTPSALARSLKVKETK
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEE
TIGLLVTATNNPFFTEVVSGVEQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEE
LMCSDARIQIGKDLNVNLPFVVMDWWPTEEKADKIYENSEYGGYLATKQLIEKGHQHIAI
EEECCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE
ITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQPRPTAV
EECHHHHHHHHHHHHHHHHHHHHCCCCCCHHCEEECCCCCCCCHHHHHHHHHCCCCCCEE
FACSDSIAFGAYQTVWHQGLHIPQDISIIGYDNITLAEYMSPPLTTINQPKAELGKLAVE
EEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCEEHHHHCCCCCCCCCCCHHHHHHHHHH
TLLQRIKNPTAKHRTLLLEPQLVWRESVRQLYQEKRG
HHHHHHCCCCCHHCEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATMKDIARIAKVSTSTVSHVINNSRFVSDEIRDKVMHVVKELNYTPSALARSLKVKETK
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEE
TIGLLVTATNNPFFTEVVSGVEQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEE
LMCSDARIQIGKDLNVNLPFVVMDWWPTEEKADKIYENSEYGGYLATKQLIEKGHQHIAI
EEECCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEE
ITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQPRPTAV
EECHHHHHHHHHHHHHHHHHHHHCCCCCCHHCEEECCCCCCCCHHHHHHHHHCCCCCCEE
FACSDSIAFGAYQTVWHQGLHIPQDISIIGYDNITLAEYMSPPLTTINQPKAELGKLAVE
EEECCCHHHHHHHHHHHCCCCCCCCCEEEECCCEEHHHHCCCCCCCCCCCHHHHHHHHHH
TLLQRIKNPTAKHRTLLLEPQLVWRESVRQLYQEKRG
HHHHHHCCCCCHHCEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100