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The map label for this gene is ytbE

Identifier: 15673832

GI number: 15673832

Start: 1917860

End: 1918261

Strand: Reverse

Name: ytbE

Synonym: L101219

Alternate gene names: 15673832

Gene position: 1918261-1917860 (Counterclockwise)

Preceding gene: 15673833

Following gene: 15673831

Centisome position: 81.09

GC content: 36.32

Gene sequence:

>402_bases
GTGAATAAGCAACAAGCAGAACTTTTGAATGGTATTGCATTGGCCTATATTGGGGATGCGATTTATGAGGTCTTTGTGCG
TGAGTACTTATTAGATAAAGGCCTGACAAAGCCCGCCATGCTTCAAAAAAATGCAACGAAATTTGTGTCAGCTAAAGCAC
AAGCAAAAATTATTTCTGCAATGGATGAAGTTGATTTTTTGACTGAATATGAATTGACTTATTTTAAAAGAGGGCGCAAT
GCTCATTCTAAAACGACGGCCAAAAATACCGATGTTGTTACTTACAGAATATCAACAGGTTTTGAAGCTGTTGTTGGAAT
TCTCCATTTAACGCAACAAAAAGAGCGACTTCAAGAATTTTGGGATTTTTCCCTTAAAACAATTGAAGCAGATCTGGTTT
AA

Upstream 100 bases:

>100_bases
CGAGAAGTCCGTGATTTTGCGAAGTCAGATGAAATTCGTGACGCTTTGAAAGCTCAAGGGATTGTTCTTGAAGATACAAA
AGACGGGGTACGGTGGCATC

Downstream 100 bases:

>100_bases
AGTTTATTAATTACAAAGATCAAAGTATTAAGCAAATTATTTTAAAAAAAGAAAAAAATCCGCTAGAATAGGTATGCAAA
GATACAAAGAAAAAAATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNKQQAELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDFLTEYELTYFKRGRN
AHSKTTAKNTDVVTYRISTGFEAVVGILHLTQQKERLQEFWDFSLKTIEADLV

Sequences:

>Translated_133_residues
MNKQQAELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDFLTEYELTYFKRGRN
AHSKTTAKNTDVVTYRISTGFEAVVGILHLTQQKERLQEFWDFSLKTIEADLV
>Mature_133_residues
MNKQQAELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDFLTEYELTYFKRGRN
AHSKTTAKNTDVVTYRISTGFEAVVGILHLTQQKERLQEFWDFSLKTIEADLV

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15129; Mature: 15129

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQQAELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MDEVDFLTEYELTYFKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQQKERLQEF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
WDFSLKTIEADLV
HHHHHHHHHCCCC
>Mature Secondary Structure
MNKQQAELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
MDEVDFLTEYELTYFKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQQKERLQEF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
WDFSLKTIEADLV
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]