Click here to switch to the map view.

The map label for this gene is ysdE

Identifier: 15673760

GI number: 15673760

Start: 1837127

End: 1838305

Strand: Reverse

Name: ysdE

Synonym: L20481

Alternate gene names: 15673760

Gene position: 1838305-1837127 (Counterclockwise)

Preceding gene: 15673761

Following gene: 15673759

Centisome position: 77.71

GC content: 35.54

Gene sequence:

>1179_bases
GTGGAGCATTCAGCTACTCAGCGCGAATCCCAAAAAGTATGGACGGCCATTAAAAATTGGTTTCTAGTGGACAAAGTTTT
TCTGATTTCGTTTATTATTGCAATTATTGCCATTAGTTTGGGTGGAGTGACAACGCGTTTCTTTAATTGTCACGTCATCG
TTACGGTTTCAGGTTTGATGCTTGTAATTGGTGGTTTTAAAGAAACAGGTTTGTTACAGTATTTGGGACAATCCTTAGTT
AAAAGAAGTACAACAACGCGTCAGCTCGTTCGATTTACGACGCTACTTACCTTCTTTTTAGCCGTTTTTTTTACAAATGA
TTTAACAATTTTGACGGTTTTACCGCTCTATTTAGCGATTACTAAAGAAATTAAAAACCGAAAGTCAGTTTATATTGGAG
CAGCATTGATTGTTCCGGCCTGTCACATTGGTTCTGCCTTACTTCCGCAAGGTAATCCGCATAATCTTTATTTGTATTCT
TTTTATAAAGTAGCAGCACATCATGGTGGTGCCGCTTTAACTAATTTGGACTTTTTTAAAGGAACAGGCGCTTTATGGAT
TTTGGGTTTATTGATTTTGATGATTGCTTGTCAATTCATTGATAATGAGCCTTTGGTGATTGAAACTAAAGTGACGCAAT
TTAATAAAGTTGAAACTTCTATTTTTGTTGTTTTGATGTTATTGATGGCAGCTTCGGTTTTTGGCTATGTGAATTTTTAT
CTTGCTGGAGCAATTGTTGCTTTAGTTGTGTTAATTTATCGTCCGAGACTTTTTAAAGGAATTGATTATCATCTTTTATT
TACATTTATCTTTTTCTTTTTGATTGTAGGAAATATTGCTAATATCAGTGTGTTGACTGATTTTATCAGTAATACTTTAG
TTGGACCGCAGGCTTCTTTTTTAGGAACTGTGATTATGAGTCAATTTATCTCTAATATCGCGGCCCCAATTTTGATTTCT
CCGTTCACTCCTCATGCTGTTTCTTTGGTGCTTGGAGCTGATATTGGGGGAATTGGCACAATTGTTTCGTCAATGGCAAC
GCTGATTGCTTACAAAGTTATTAGAATGAATGCGCGTGGTGAAACGCGAGGATTTGTAAAATATTTTACAATTGTAAATG
CAGGATTTGTTGCGATTCTAACTTTGATTGGTTTAGTCATTGTGACAATTGTTGGTTAA

Upstream 100 bases:

>100_bases
AAATTAATTTACTTTTATATGAGAAAAAGCTTGTCACTGTCATCTTTAGATGGTATAATTTATTGTGGTGCAAAATTTTA
TATGCTAGTTAGGAGAAGTA

Downstream 100 bases:

>100_bases
GATGTAAAAGTTGGAGCATCCAGCTTTTTTATTATGGAAAATTTTTACTGACAGAGCTGTCAGTAATTTTTTATTTATCT
CTGATAAAAAAGTGTTAAAT

Product: cation transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MEHSATQRESQKVWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNCHVIVTVSGLMLVIGGFKETGLLQYLGQSLV
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGAALTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVTQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANISVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVAILTLIGLVIVTIVG

Sequences:

>Translated_392_residues
MEHSATQRESQKVWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNCHVIVTVSGLMLVIGGFKETGLLQYLGQSLV
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGAALTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVTQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANISVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVAILTLIGLVIVTIVG
>Mature_392_residues
MEHSATQRESQKVWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNCHVIVTVSGLMLVIGGFKETGLLQYLGQSLV
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGAALTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVTQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANISVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVAILTLIGLVIVTIVG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=321, Percent_Identity=25.8566978193146, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 42925; Mature: 42925

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHSATQRESQKVWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNCHVIVTVSGLM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEEEHHHHH
LVIGGFKETGLLQYLGQSLVKRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYSFYKVAAHHGGAALTNLDFFK
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHC
GTGALWILGLLILMIACQFIDNEPLVIETKVTQFNKVETSIFVVLMLLMAASVFGYVNFY
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANISVLTDFISNTLVGPQASF
HHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH
LGTVIMSQFISNIAAPILISPFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARG
HHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ETRGFVKYFTIVNAGFVAILTLIGLVIVTIVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEHSATQRESQKVWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNCHVIVTVSGLM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEEEEHHHHH
LVIGGFKETGLLQYLGQSLVKRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYSFYKVAAHHGGAALTNLDFFK
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHC
GTGALWILGLLILMIACQFIDNEPLVIETKVTQFNKVETSIFVVLMLLMAASVFGYVNFY
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANISVLTDFISNTLVGPQASF
HHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH
LGTVIMSQFISNIAAPILISPFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARG
HHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ETRGFVKYFTIVNAGFVAILTLIGLVIVTIVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]