Click here to switch to the map view.

The map label for this gene is xynB

Identifier: 15673487

GI number: 15673487

Start: 1543238

End: 1544917

Strand: Reverse

Name: xynB

Synonym: L0234

Alternate gene names: 15673487

Gene position: 1544917-1543238 (Counterclockwise)

Preceding gene: 30024047

Following gene: 15673486

Centisome position: 65.31

GC content: 38.45

Gene sequence:

>1680_bases
ATGTCACTTATTCAAAACCCAATTCTTCCCGGGTTTAATGCAGACCCAAGCATTATTCGCGTAGAAGATACTTATTACAT
CGCGAACTCCACTTTTGAATGGTTCCCCGGTGTTCGTTTACATGAATCAAAAGATTTAGAACATTGGAGCCTACTTCCAA
GTCCATTGTCGACAACCACTTTGTTGGATATGAGAGGAAACTCAGCTTCAGGTGGAATCTGGGCTCCTGACTTATCTTAT
GCGGATGGTAAATTTTGGCTTGTTTATACAGATGTTAAGGTTGTCAATGGTGCTTTCAAAGATATGACCAATTATTTAAC
AACAGCCACAGATATCAAAGGACCATGGACAGACCCAATCAAGCTCAATGGTCTTGGCTTTGACGCTTCACTTTTCCATG
ATAAAGACGGACGGAAATACTTAGTTCAACAAACATGGGATCATCGTGAATACAAGCATCCATTTGACGGAATCACATTG
ACTGAGTTTGATATGACAACAATGAAATTACAACCTAAAAAAGCTAAAACGATTTACAATGGTACAAATGTCAAATTAGT
TGAAGGCCCACATCTCTACCAAATTAATGATTATTATTATCTTTTTGCGGCTCAAGGTGGAACAGTCTTTACGCACCAAG
AAGTCGTGGCCCGCTCTAAAACATTGGATACTTTATCTTTTGAAACTGAACCCGGCGATCCATTTATTACAAACTTCGAT
ACTCCTGATAATTATATTCAAAAACAAGGACACGGAGGTCTTGTATCTACACCCAAAGGTGAGTGGTATTATGCTTCCTT
ATGCGCTCGACCATGGAATCATAAAAATGAATCAAGCACAGACCCTCGTGGTTGGAGCTCTTTAGGTCGTGAAACTTCTA
TCCAAAAAGTGGAATGGGACGAAGAAGGTTGGCCACGTATTGTTGGTGGTCATGGTGGGACAACTTTTGTTGAAGGACCA
AAAGATGCAATTCAAACTAATGCACCTGCTGAACACAGTCAAAAAGACGATTTTGCAAGTTCTACTTTGGATATTAACTG
GAATACATTGCGTGTCCCATTTACTGAGAAAATGGGTTCAGTTGGGAATGGCAAGTTGACATTAATTGGTCAGGGCTCTT
TGGCAAATAATTTTGATTTATCTTTGATTGCTAGACGTTGGCAAGCTTTCTATTTTGACGCAGAAGTCAAAGTAAAATTT
GACCCATTTTCTTACCAACAAATGGCTGGATTAACCAACTATTACAATGACCGCCATTGGTCTTTCGTCTTTATCACATG
GAATGAAGTCAATGGAGCTGTTATTGAAGTGGCTGAAAATAACAGAGGAAACTATACTTCTTATTTAAAAGATAATGCCA
TTAAAATTCCTGACGGAACTGAATATGTTTGGTTCCGCACTAAAGTCCGTAAAGAATCATATTCTTATGAATATAGTTTT
GACGGCAAAAAATTCATAGAAATTCCTGTAGTCTTAGATGCGGCTGTCCTTTCAGATGATTATGTTTTACAAACTTATGG
CGGATTCTTCACTGGAGCATTTGTCGGGCTTGCTGCCGTTGATTATTCTGGATATGATAGAGTTGCAGAATTTTATAACT
TTGACTATAAAGAATTAGGAGACAAGGTCTTACCAGACGGTTCTTATACTTGGAAAGCAAGTGAATCAAGATTTGATTAG

Upstream 100 bases:

>100_bases
AATTTCTGATAAAGATGTAGCAGAGATTAATCAACAGCTTGATGAAAAACGTGCTCAACTTAAGGAAGCGGAATAATTTA
TATTAAAAGGAGACAAAATC

Downstream 100 bases:

>100_bases
TCTATAATCCCTTACTACATATTTGTAGTAAGGGATTTTTAGTAAAGGAAAAAGTCGATGAGAACGTTAGATGAAGCAGA
AAAATTACGTTTAGCAAAGC

Product: beta-1,4-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MSLIQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTTLLDMRGNSASGGIWAPDLSY
ADGKFWLVYTDVKVVNGAFKDMTNYLTTATDIKGPWTDPIKLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITL
TEFDMTTMKLQPKKAKTIYNGTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTLDTLSFETEPGDPFITNFD
TPDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTDPRGWSSLGRETSIQKVEWDEEGWPRIVGGHGGTTFVEGP
KDAIQTNAPAEHSQKDDFASSTLDINWNTLRVPFTEKMGSVGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVKF
DPFSYQQMAGLTNYYNDRHWSFVFITWNEVNGAVIEVAENNRGNYTSYLKDNAIKIPDGTEYVWFRTKVRKESYSYEYSF
DGKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYDRVAEFYNFDYKELGDKVLPDGSYTWKASESRFD

Sequences:

>Translated_559_residues
MSLIQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTTLLDMRGNSASGGIWAPDLSY
ADGKFWLVYTDVKVVNGAFKDMTNYLTTATDIKGPWTDPIKLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITL
TEFDMTTMKLQPKKAKTIYNGTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTLDTLSFETEPGDPFITNFD
TPDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTDPRGWSSLGRETSIQKVEWDEEGWPRIVGGHGGTTFVEGP
KDAIQTNAPAEHSQKDDFASSTLDINWNTLRVPFTEKMGSVGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVKF
DPFSYQQMAGLTNYYNDRHWSFVFITWNEVNGAVIEVAENNRGNYTSYLKDNAIKIPDGTEYVWFRTKVRKESYSYEYSF
DGKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYDRVAEFYNFDYKELGDKVLPDGSYTWKASESRFD
>Mature_558_residues
SLIQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTTLLDMRGNSASGGIWAPDLSYA
DGKFWLVYTDVKVVNGAFKDMTNYLTTATDIKGPWTDPIKLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITLT
EFDMTTMKLQPKKAKTIYNGTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTLDTLSFETEPGDPFITNFDT
PDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTDPRGWSSLGRETSIQKVEWDEEGWPRIVGGHGGTTFVEGPK
DAIQTNAPAEHSQKDDFASSTLDINWNTLRVPFTEKMGSVGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVKFD
PFSYQQMAGLTNYYNDRHWSFVFITWNEVNGAVIEVAENNRGNYTSYLKDNAIKIPDGTEYVWFRTKVRKESYSYEYSFD
GKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYDRVAEFYNFDYKELGDKVLPDGSYTWKASESRFD

Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=540, Percent_Identity=46.1111111111111, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 63468; Mature: 63337

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTT
CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHCCCEEEECCCCCCHHCCCCCCCCCEE
LLDMRGNSASGGIWAPDLSYADGKFWLVYTDVKVVNGAFKDMTNYLTTATDIKGPWTDPI
EEEECCCCCCCCEECCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHEECCCCCCCCCCCE
KLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITLTEFDMTTMKLQPKKAKTIYN
EEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEECCCHHCEEEC
GTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTLDTLSFETEPGDPFITNFD
CCEEEEEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHCCCEEEEEECCCCCCEEECCC
TPDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTDPRGWSSLGRETSIQKVEWD
CCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCEEEECC
EEGWPRIVGGHGGTTFVEGPKDAIQTNAPAEHSQKDDFASSTLDINWNTLRVPFTEKMGS
CCCCCEEEECCCCCEEECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHCC
VGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVKFDPFSYQQMAGLTNYYNDRHW
CCCCEEEEEECCCCCCCCCHHHHHHHHEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCEE
SFVFITWNEVNGAVIEVAENNRGNYTSYLKDNAIKIPDGTEYVWFRTKVRKESYSYEYSF
EEEEEEEECCCCEEEEEEECCCCCEEEEECCCCEECCCCCEEEEEEEEEECCCCCEEEEC
DGKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYDRVAEFYNFDYKELG
CCCEEEEEEEEEEEEHHCCCEEEECCCCHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHC
DKVLPDGSYTWKASESRFD
CEECCCCCEEEECCCCCCC
>Mature Secondary Structure 
SLIQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTT
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHCCCEEEECCCCCCHHCCCCCCCCCEE
LLDMRGNSASGGIWAPDLSYADGKFWLVYTDVKVVNGAFKDMTNYLTTATDIKGPWTDPI
EEEECCCCCCCCEECCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHEECCCCCCCCCCCE
KLNGLGFDASLFHDKDGRKYLVQQTWDHREYKHPFDGITLTEFDMTTMKLQPKKAKTIYN
EEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEECCCHHCEEEC
GTNVKLVEGPHLYQINDYYYLFAAQGGTVFTHQEVVARSKTLDTLSFETEPGDPFITNFD
CCEEEEEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHCCCEEEEEECCCCCCEEECCC
TPDNYIQKQGHGGLVSTPKGEWYYASLCARPWNHKNESSTDPRGWSSLGRETSIQKVEWD
CCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCEEEECC
EEGWPRIVGGHGGTTFVEGPKDAIQTNAPAEHSQKDDFASSTLDINWNTLRVPFTEKMGS
CCCCCEEEECCCCCEEECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHCC
VGNGKLTLIGQGSLANNFDLSLIARRWQAFYFDAEVKVKFDPFSYQQMAGLTNYYNDRHW
CCCCEEEEEECCCCCCCCCHHHHHHHHEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCEE
SFVFITWNEVNGAVIEVAENNRGNYTSYLKDNAIKIPDGTEYVWFRTKVRKESYSYEYSF
EEEEEEEECCCCEEEEEEECCCCCEEEEECCCCEECCCCCEEEEEEEEEECCCCCEEEEC
DGKKFIEIPVVLDAAVLSDDYVLQTYGGFFTGAFVGLAAVDYSGYDRVAEFYNFDYKELG
CCCEEEEEEEEEEEEHHCCCEEEECCCCHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHC
DKVLPDGSYTWKASESRFD
CEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2440680; 1765080 [H]