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The map label for this gene is citR

Identifier: 15673169

GI number: 15673169

Start: 1205754

End: 1206683

Strand: Reverse

Name: citR

Synonym: L0037

Alternate gene names: 15673169

Gene position: 1206683-1205754 (Counterclockwise)

Preceding gene: 15673177

Following gene: 15673167

Centisome position: 51.01

GC content: 39.78

Gene sequence:

>930_bases
ATGAATAATCATGAACTTCTCGCCAATTTGGCACAAGATTTTTATTTTTTACAATTAAGCCTCAGTGAGCTTTCCGAGAA
ATATCATCTTAGTCGCTATTTGGTCAACAAATATCTCGAAGACGCTAGAAAGGAAGGAATCGTGACGATTACCATTTCCT
CACCTATTGAACGTTCATTCGAGTTAGAAAAACAATTCAAAACCCTTTTTGATATCCCACAGATTTACATCATTAAAGAT
GTCGAAGACGGGAACAGCGAGTCACTCATTAAATTTGCCGCCAAACGCATCGAATCCCATATATTGAATTCCCAAACCGT
AGGTACTGTTTGGGGAGAGACGATATTTAGAATAATTGACCATTTCACTCCCCAAGAACATTCTGACCTTCTATTTACAC
AGATGATGGGCGAAAATCGTAAATATCATTCCGCCGCAGGCTCTATGCGGATGGTTGAAAAAGCTGCCAAACAATTTTCG
GCTCAATATGTCACTTTATCAGGGCCGCTTTATATCACCAATCCTGCTGTTCGAAAAGGCATGACAGAAGAAATTGCCTC
TCAGCCAGCATTCACAACTGCTAAAAGAATGGATTTGATTTTCAGTGGTCTCGGAACTCTTGCATCAGTAAATTCGATTC
CAATTTGGGAACAACATACAAATGAAATTTTTCCAGACATTAATCTGGGTGCCATTGCCGGGATGGCATATGGCAGGCCC
TATGATATTAACGGAAATATTCTAGTTACGCCAGAAAATGATTGCGTTTTCGGTGTAGATATGAAAACAATTTTTCAACC
CCCTAAACGCGTCGGGGTTGTCAAAAGTAAATTTAAAACTCAAGCCACCTTGGGCGCACTGCGTGGTAAATTCTTCACAG
AGTTGATTATATCAGAATCAATAGCAGAACGTATCCTTGCAGAGTTGTAA

Upstream 100 bases:

>100_bases
CTTTCCGATGTATTAACATTTTTAAAAATAAATCTTCAACTTTTTCCATTTTTTAAATTTTTAAACTCCTTTTTAATATT
TAAAATGCTATAATTACTTT

Downstream 100 bases:

>100_bases
CATAGAAAGAGGCATTTAAGCCTTTTTTTTCTGTTATAAAGACTATAAAATCATGATAACTGGAATAACAACGACAAAGA
GTACCGATGCAACCGCAACA

Product: citrate lyase regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNNHELLANLAQDFYFLQLSLSELSEKYHLSRYLVNKYLEDARKEGIVTITISSPIERSFELEKQFKTLFDIPQIYIIKD
VEDGNSESLIKFAAKRIESHILNSQTVGTVWGETIFRIIDHFTPQEHSDLLFTQMMGENRKYHSAAGSMRMVEKAAKQFS
AQYVTLSGPLYITNPAVRKGMTEEIASQPAFTTAKRMDLIFSGLGTLASVNSIPIWEQHTNEIFPDINLGAIAGMAYGRP
YDINGNILVTPENDCVFGVDMKTIFQPPKRVGVVKSKFKTQATLGALRGKFFTELIISESIAERILAEL

Sequences:

>Translated_309_residues
MNNHELLANLAQDFYFLQLSLSELSEKYHLSRYLVNKYLEDARKEGIVTITISSPIERSFELEKQFKTLFDIPQIYIIKD
VEDGNSESLIKFAAKRIESHILNSQTVGTVWGETIFRIIDHFTPQEHSDLLFTQMMGENRKYHSAAGSMRMVEKAAKQFS
AQYVTLSGPLYITNPAVRKGMTEEIASQPAFTTAKRMDLIFSGLGTLASVNSIPIWEQHTNEIFPDINLGAIAGMAYGRP
YDINGNILVTPENDCVFGVDMKTIFQPPKRVGVVKSKFKTQATLGALRGKFFTELIISESIAERILAEL
>Mature_309_residues
MNNHELLANLAQDFYFLQLSLSELSEKYHLSRYLVNKYLEDARKEGIVTITISSPIERSFELEKQFKTLFDIPQIYIIKD
VEDGNSESLIKFAAKRIESHILNSQTVGTVWGETIFRIIDHFTPQEHSDLLFTQMMGENRKYHSAAGSMRMVEKAAKQFS
AQYVTLSGPLYITNPAVRKGMTEEIASQPAFTTAKRMDLIFSGLGTLASVNSIPIWEQHTNEIFPDINLGAIAGMAYGRP
YDINGNILVTPENDCVFGVDMKTIFQPPKRVGVVKSKFKTQATLGALRGKFFTELIISESIAERILAEL

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=300, Percent_Identity=24, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787791, Length=314, Percent_Identity=20.0636942675159, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34842; Mature: 34842

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNHELLANLAQDFYFLQLSLSELSEKYHLSRYLVNKYLEDARKEGIVTITISSPIERSF
CCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHH
ELEKQFKTLFDIPQIYIIKDVEDGNSESLIKFAAKRIESHILNSQTVGTVWGETIFRIID
HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HFTPQEHSDLLFTQMMGENRKYHSAAGSMRMVEKAAKQFSAQYVTLSGPLYITNPAVRKG
HCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEECHHHHHC
MTEEIASQPAFTTAKRMDLIFSGLGTLASVNSIPIWEQHTNEIFPDINLGAIAGMAYGRP
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCC
YDINGNILVTPENDCVFGVDMKTIFQPPKRVGVVKSKFKTQATLGALRGKFFTELIISES
EECCCCEEEECCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAERILAEL
HHHHHHHCC
>Mature Secondary Structure
MNNHELLANLAQDFYFLQLSLSELSEKYHLSRYLVNKYLEDARKEGIVTITISSPIERSF
CCCHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHH
ELEKQFKTLFDIPQIYIIKDVEDGNSESLIKFAAKRIESHILNSQTVGTVWGETIFRIID
HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HFTPQEHSDLLFTQMMGENRKYHSAAGSMRMVEKAAKQFSAQYVTLSGPLYITNPAVRKG
HCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEECHHHHHC
MTEEIASQPAFTTAKRMDLIFSGLGTLASVNSIPIWEQHTNEIFPDINLGAIAGMAYGRP
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCC
YDINGNILVTPENDCVFGVDMKTIFQPPKRVGVVKSKFKTQATLGALRGKFFTELIISES
EECCCCEEEECCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAERILAEL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]