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The map label for this gene is ylbD

Identifier: 15673088

GI number: 15673088

Start: 1114956

End: 1116305

Strand: Reverse

Name: ylbD

Synonym: L114717

Alternate gene names: NA

Gene position: 1116305-1114956 (Counterclockwise)

Preceding gene: 15673101

Following gene: 15673087

Centisome position: 47.19

GC content: 35.19

Gene sequence:

>1350_bases
ATGACAATAAAAACTTCATTTGCAAAGTTTGCTGGTAATTCATCGCGCTTTGTCTTGGAAAAATTTTTCAAGCGCGGTTC
AACTTTACCAGGAAAAATTGCTTTAAAATTTGATCCTGAAATTCTTAAATCACTGACAAAAAATTATGAAATCATTGTTG
TGACTGGGACAAATGGAAAAACATTGACCACAGCACTGACCGTGGGAATTCTAGAAAAGGCTTTTGGACCGGTTGTGACA
AATCCAACTGGGGCTAATATGATAACGGGGATTGTATCCACATTTTTGAAAGCTCCCAAAGCGAAAACTGGCGAAAAAAA
ATTTGCTGTTCTTGAGATTGATGAAGCGAGTTTGCCAAAAATCACTGAATATATCAAACCTTCGTTATTTGTGTTTACTA
ATATTTTCCGTGACCAAATGGACCGCTATGGCGAGATTTATACAACTTATGACTTTATTGTCAAGGGTGCGGCAAATAGT
CCTAAAGGTACGGTTTTGTTAAATGGCGATAGTCCACTTTTCAACTCAAAAAAATTAGTTAATCCTGTAAAATACTATGG
TTTCAACCATGAAAGCCATGAACCTACTCATGCTCATTACAATACTGAGGGGATTGTTTGTCCGGTTTGTCATCATATTT
TGGCTTACAAGATGAATACCTATGCTAACTTAGGAAATTATATCTGTGAAAATTGTGGTTTTAGTCGTCCAGAATTAGAT
TATCAACTGACAGAATTATCAGAAATTACAAATACTTCTTCTAAATTTGTCATTGATGGGACAGATTATAAAATTAATGT
TGGCGGACTTTATAATATTTATAATGCTCTTGCTGCTGTATCTGTCGCTGAATATTTCAATGTGCCAAAAGAAACAATTG
CGGCTGGTTTTGAACTTTCTAAAGCAGTTTTTGGTCGTCAAGAAACGCTTGAAATTGACGGAAAAAAAGTAACCATTGTT
TTGATTAAAAATCCAGTAGGTGCTAATCAAGCCCTTGAAATGATGAAATTAGCCAATTATCCTTTCACTTTAGTTAGCCT
TTTAAATGCCAATTATGCTGACGGAATTGACACAAGTTGGATTTGGGATGCTAATTTTGAATTAATTAATGATATGGAAA
TTGACCAAATTATCACAGGTGGTGTTCGTTCATCTGAAATGGCTAGAAGAATGCGTGTGACAGGTTTTAATGCCGAAAAT
ATTTCTGAACGCAAGGAACTTTCAGAAGTTTTAGAGGCAATTAAAGAGAGTCCAAAAGAGCATGTTTATATTTTGGCAAC
TTACACTGCCATGTTACAAATGCGTGAATTATTGGCTGAGGGTCATTATCTTGGAAAGGAAATGCGTTAA

Upstream 100 bases:

>100_bases
TTTTATCACTTTTTTTTGTTAGTAGTATCAAATATGTTTTATAAATTTTTTTTCAAATTTTATAGAGCAAAAAATCCCTG
TATTTGGTATAATATTGCTT

Downstream 100 bases:

>100_bases
ATGGCTTATATCTCTTTAAAATCAAATCTTGAAAATCCAAAGTATTCCCTCAACGTGGCTCATCTTTATGGTGATTTAAT
GAATACTTATGGTGATAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Mur Ligase Family Protein; UDP-N-Acetylmuramyl Tripeptide Synthetase; Ligase; Mur Ligase; UDP-N-Acetylmuramoylalanine-D-Glutamate Ligase; Mur Ligase Middle Domain Protein; Conserved Domain Protein; UDP-N-Acetylmuramyl Tripeptide Synthase-Like Protein; Cell Wall Biosynthesis Protein Mur Ligase Family; UDP-N-Acetylmuramyl Tripeptide Synthetase MurC; Peptide Ligase; UDP-N-Acetylmuramate-Alanine Ligase; UDP-N-Acetylmuramyl Tripeptide Synthetase Like; Mur Ligase Middle Domain-Containing Protein; Murein Ligase; UDP-N-Acetylmuramoyl-L-Alanyl-D-Glutamate-Lysine Ligase; Udp-N-Acetylmuramyl Tripeptide Synthetase; UDP-N-Acetylmuramyl Peptide Synthetase

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MTIKTSFAKFAGNSSRFVLEKFFKRGSTLPGKIALKFDPEILKSLTKNYEIIVVTGTNGKTLTTALTVGILEKAFGPVVT
NPTGANMITGIVSTFLKAPKAKTGEKKFAVLEIDEASLPKITEYIKPSLFVFTNIFRDQMDRYGEIYTTYDFIVKGAANS
PKGTVLLNGDSPLFNSKKLVNPVKYYGFNHESHEPTHAHYNTEGIVCPVCHHILAYKMNTYANLGNYICENCGFSRPELD
YQLTELSEITNTSSKFVIDGTDYKINVGGLYNIYNALAAVSVAEYFNVPKETIAAGFELSKAVFGRQETLEIDGKKVTIV
LIKNPVGANQALEMMKLANYPFTLVSLLNANYADGIDTSWIWDANFELINDMEIDQIITGGVRSSEMARRMRVTGFNAEN
ISERKELSEVLEAIKESPKEHVYILATYTAMLQMRELLAEGHYLGKEMR

Sequences:

>Translated_449_residues
MTIKTSFAKFAGNSSRFVLEKFFKRGSTLPGKIALKFDPEILKSLTKNYEIIVVTGTNGKTLTTALTVGILEKAFGPVVT
NPTGANMITGIVSTFLKAPKAKTGEKKFAVLEIDEASLPKITEYIKPSLFVFTNIFRDQMDRYGEIYTTYDFIVKGAANS
PKGTVLLNGDSPLFNSKKLVNPVKYYGFNHESHEPTHAHYNTEGIVCPVCHHILAYKMNTYANLGNYICENCGFSRPELD
YQLTELSEITNTSSKFVIDGTDYKINVGGLYNIYNALAAVSVAEYFNVPKETIAAGFELSKAVFGRQETLEIDGKKVTIV
LIKNPVGANQALEMMKLANYPFTLVSLLNANYADGIDTSWIWDANFELINDMEIDQIITGGVRSSEMARRMRVTGFNAEN
ISERKELSEVLEAIKESPKEHVYILATYTAMLQMRELLAEGHYLGKEMR
>Mature_448_residues
TIKTSFAKFAGNSSRFVLEKFFKRGSTLPGKIALKFDPEILKSLTKNYEIIVVTGTNGKTLTTALTVGILEKAFGPVVTN
PTGANMITGIVSTFLKAPKAKTGEKKFAVLEIDEASLPKITEYIKPSLFVFTNIFRDQMDRYGEIYTTYDFIVKGAANSP
KGTVLLNGDSPLFNSKKLVNPVKYYGFNHESHEPTHAHYNTEGIVCPVCHHILAYKMNTYANLGNYICENCGFSRPELDY
QLTELSEITNTSSKFVIDGTDYKINVGGLYNIYNALAAVSVAEYFNVPKETIAAGFELSKAVFGRQETLEIDGKKVTIVL
IKNPVGANQALEMMKLANYPFTLVSLLNANYADGIDTSWIWDANFELINDMEIDQIITGGVRSSEMARRMRVTGFNAENI
SERKELSEVLEAIKESPKEHVYILATYTAMLQMRELLAEGHYLGKEMR

Specific function: Unknown

COG id: COG0769

COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50029; Mature: 49898

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKTSFAKFAGNSSRFVLEKFFKRGSTLPGKIALKFDPEILKSLTKNYEIIVVTGTNGK
CCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCEEEEEEECCCCC
TLTTALTVGILEKAFGPVVTNPTGANMITGIVSTFLKAPKAKTGEKKFAVLEIDEASLPK
EEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHH
ITEYIKPSLFVFTNIFRDQMDRYGEIYTTYDFIVKGAANSPKGTVLLNGDSPLFNSKKLV
HHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEHHEECCCCCCCCEEEECCCCCCCCCHHHC
NPVKYYGFNHESHEPTHAHYNTEGIVCPVCHHILAYKMNTYANLGNYICENCGFSRPELD
CHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YQLTELSEITNTSSKFVIDGTDYKINVGGLYNIYNALAAVSVAEYFNVPKETIAAGFELS
HHHHHHHHHCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHH
KAVFGRQETLEIDGKKVTIVLIKNPVGANQALEMMKLANYPFTLVSLLNANYADGIDTSW
HHHHCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCE
IWDANFELINDMEIDQIITGGVRSSEMARRMRVTGFNAENISERKELSEVLEAIKESPKE
EECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
HVYILATYTAMLQMRELLAEGHYLGKEMR
CEEEEEHHHHHHHHHHHHHCCHHCCCCCC
>Mature Secondary Structure 
TIKTSFAKFAGNSSRFVLEKFFKRGSTLPGKIALKFDPEILKSLTKNYEIIVVTGTNGK
CCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCEEEEEEECCCCC
TLTTALTVGILEKAFGPVVTNPTGANMITGIVSTFLKAPKAKTGEKKFAVLEIDEASLPK
EEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHH
ITEYIKPSLFVFTNIFRDQMDRYGEIYTTYDFIVKGAANSPKGTVLLNGDSPLFNSKKLV
HHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEHHEECCCCCCCCEEEECCCCCCCCCHHHC
NPVKYYGFNHESHEPTHAHYNTEGIVCPVCHHILAYKMNTYANLGNYICENCGFSRPELD
CHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
YQLTELSEITNTSSKFVIDGTDYKINVGGLYNIYNALAAVSVAEYFNVPKETIAAGFELS
HHHHHHHHHCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHH
KAVFGRQETLEIDGKKVTIVLIKNPVGANQALEMMKLANYPFTLVSLLNANYADGIDTSW
HHHHCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCE
IWDANFELINDMEIDQIITGGVRSSEMARRMRVTGFNAENISERKELSEVLEAIKESPKE
EECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
HVYILATYTAMLQMRELLAEGHYLGKEMR
CEEEEEHHHHHHHHHHHHHCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA