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The map label for this gene is xerD

Identifier: 15672627

GI number: 15672627

Start: 634512

End: 635450

Strand: Direct

Name: xerD

Synonym: L34517

Alternate gene names: 15672627

Gene position: 634512-635450 (Clockwise)

Preceding gene: 15672626

Following gene: 15672628

Centisome position: 26.82

GC content: 32.91

Gene sequence:

>939_bases
TTGATGCAATTCGAACAATTAGTGAAAGAATATTTACTAGAACTAAAACTGGGAAATTATTCTAAAAAAACAATGGCAGT
ATATGAACAACATATAGATAAGTTCATTGATTTCTATAAGAAAGAAATATGCAAAGAAATGGATATTTATGCAATTAATA
AAATGCACTACAAATTATTCATTTCACAGCTTTTAGATAACTCTCTGAGGGCTACATACATCAATGCAATACTCAAATCA
AACAAAGCCTTCTACAGTTATCTAATAAGGGAACAGGTGCTTAAAACAAGTCCTATGGACTCTATAAAGTTACTTAAAGA
GACCAAACAAGCACTAACAACATTCAATGATGATGAAGTTAAGGCAATGTTAAACGTGTGGAACTTTAACACCTATTTGA
ATGCTCGAAATAAATGTATAATAGCTGTCTTAGCTGACACAGGAATAAGAATATCAGAACTAATCAACATTAAAGATTCA
GACCTCACAGACCAGTATATAAGAGTTTTAGGGAAGGGTGACAAGTGGAGAGTAGTACCTATATCAAATGAATTAAACTA
TCTCCTGACTAAGTATAAGAGACTCAGAGACAACCATTTCAATAAGATAAGAAATAGGAATGGTAAAGTCAGAGAACTTG
ATTCTGAGCTGTTTCTAGGCAATACAGGGCGCTCTATAAAAACGATTACAAACATTGAGGTTATGATTACCCAAACAGGC
TTACAAGCCAATGTGAGGGCTTCTGTGAGGTGCAGTCCACATCAATTTAGACATTACTGGACATGTAAGAGCTTAGAACT
TGGACAAGACATATTTACTATCAGCAAGCTGTTAGGACACACCAATTTATCAACTACACAAATTTACTTACAAAAGCTGA
CAAATGAACAATTAATAAGTAAGGCTGTCAAATTCAGTCCATTAAAACATTTAAAATAA

Upstream 100 bases:

>100_bases
CAACCTTAAAAAATAAGGTTTAGATGGTTTTAATTAGAAATATCTGAATTTAATAAATGTCCTTTCTATGTTTAATTACA
AAACATAGGGAGGGCATTTT

Downstream 100 bases:

>100_bases
TATATCTTACAGAACATAATTTTAAACTTAACTATAACTTAACATATAAAATTATGTTTTTCTGATATACTAAAATCATT
ATGAAATTATAATTAATATC

Product: integrase-recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MMQFEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKS
NKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDS
DLTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTG
LQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLK

Sequences:

>Translated_312_residues
MMQFEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKS
NKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDS
DLTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTG
LQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLK
>Mature_312_residues
MMQFEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKS
NKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDS
DLTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTG
LQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=274, Percent_Identity=25.5474452554745, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=25, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36513; Mature: 36513

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQFEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLF
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ISQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEV
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRVLGKGDKWRVVP
HHHHHHHCCHHEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEE
ISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHEECCCCCCEEEEEEEEEEEEECC
LQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLIS
CCCCCEEEEEECHHHHHHEEEECCCHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAVKFSPLKHLK
HHHHCCCHHCCC
>Mature Secondary Structure
MMQFEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLF
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ISQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEV
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRVLGKGDKWRVVP
HHHHHHHCCHHEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEE
ISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHEECCCCCCEEEEEEEEEEEEECC
LQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLIS
CCCCCEEEEEECHHHHHHEEEECCCHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KAVKFSPLKHLK
HHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA