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The map label for this gene is ygdA

Identifier: 15672625

GI number: 15672625

Start: 632384

End: 632941

Strand: Direct

Name: ygdA

Synonym: L32389

Alternate gene names: 15672625

Gene position: 632384-632941 (Clockwise)

Preceding gene: 15672624

Following gene: 15672626

Centisome position: 26.73

GC content: 38.17

Gene sequence:

>558_bases
ATGATCAAATTTAATATCCGTGGCGAAAACGTCGAAGTGACTGATGCAATCCGCGCTTATGTTGAAGATAAAATCGGAAA
ACTTGATAAATATTTCAACGATGGTCATGAAGTAACAGCCTATGTTAATCTTAAAGTTTACAGCGAAAAACGAGCTAAAG
TTGAAGTAACTCTTCCAGCTAAAAATGTCACTTTACGTGCAGAAGATACTTCACAAGATATGTATTCTTCAATTGATTTT
GTAGAAGAAAAACTCGAACGTCAAATTCGTAAATATAAGACACGTATGAACCGTAAACCACGCAATGCTGTCCCAACAGG
ACAAGCTTTTGGCGATGAGTTTGCACCATTAGAAAAAGCCGATGAAGTTGCTGAGGATCACGTAGATATTGTACGTACTA
AGCATGTTGCTTTAAAACCAATGGATGCCGAAGAAGCAGTGCTTCAGATGGATATGTTGGGACATGATTTCTACGTCTTT
ACAGATGCTGATAGTAACGGAACCCACGTCGTTTACCGTCGTACAGATGGTCGTTATGGTTTAATTGAAACAGAATAA

Upstream 100 bases:

>100_bases
AATAAAGGAAAGGACAGTTCGAAAAGATTCAGAAGTCCTGAAAATTCCAAAAGTTTAAGGGCTTCATTGAAACAAAAAGA
ACTGTTGAAGAGGTACTCTT

Downstream 100 bases:

>100_bases
AAAAATAAGGATAGATTTTTCTATCCTTTTTTATTAATGTTCAGATAAAAAATCAAAATGTAAGCGCAAAACCTTTTGAA
GTTTAGCTTTGCGAAGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MIKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKNVTLRAEDTSQDMYSSIDF
VEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFAPLEKADEVAEDHVDIVRTKHVALKPMDAEEAVLQMDMLGHDFYVF
TDADSNGTHVVYRRTDGRYGLIETE

Sequences:

>Translated_185_residues
MIKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKNVTLRAEDTSQDMYSSIDF
VEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFAPLEKADEVAEDHVDIVRTKHVALKPMDAEEAVLQMDMLGHDFYVF
TDADSNGTHVVYRRTDGRYGLIETE
>Mature_185_residues
MIKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPAKNVTLRAEDTSQDMYSSIDF
VEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFAPLEKADEVAEDHVDIVRTKHVALKPMDAEEAVLQMDMLGHDFYVF
TDADSNGTHVVYRRTDGRYGLIETE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=97, Percent_Identity=37.1134020618557, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21283; Mature: 21283

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPA
CEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECC
KNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFAPLEKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
DEVAEDHVDIVRTKHVALKPMDAEEAVLQMDMLGHDFYVFTDADSNGTHVVYRRTDGRYG
HHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEE
LIETE
EEECC
>Mature Secondary Structure
MIKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAYVNLKVYSEKRAKVEVTLPA
CEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECC
KNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDEFAPLEKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
DEVAEDHVDIVRTKHVALKPMDAEEAVLQMDMLGHDFYVFTDADSNGTHVVYRRTDGRYG
HHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEE
LIETE
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA