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The map label for this gene is yebB

Identifier: 15672389

GI number: 15672389

Start: 411078

End: 412121

Strand: Direct

Name: yebB

Synonym: L11083

Alternate gene names: 15672389

Gene position: 411078-412121 (Clockwise)

Preceding gene: 15672388

Following gene: 15672390

Centisome position: 17.38

GC content: 35.25

Gene sequence:

>1044_bases
ATGAAAACTGAAAAAGAAATCCATCAACATCGCAAAGATGAACACTTATCGTTAGCTTATAAATATTGGCGTGAAGAAAA
AAATCAGACCTCGGGCCTGACTTTTTCTGATAGTCGAATCATTCCTAATAGTTTGCCAGAATTATCTACTAAAAAAATCA
ACTTTTCATCAGAAGTATTTGGACAGAATTTTGAATTTCCTTTTTATATTGAAGCGATGACTGGTGGAACAGAGCGAGCA
GATAAAATCAATGCTCAATTAGCAGAAATTGCGAAAAATCAACATTTAGCCATGGCGGTCGGCTCTCAATCGATTGCTTT
GAAATTTCCAGAACTAGCTGCTGGTTTCAGTGAAGTTCGTAAAATACACTCTTCTGGTTTTCTTTTTGCCAATATCGGCG
CAGGTCATTCTCTAGAAAATGCCAAGCGAGCGGTGGATATGATTGAGGCAAATGCTTTAGAAATCCATGTCAATACAGCG
CAAGAATTGCCAATGGATGAAGGAGACCGTGAATTTTATTGGTTAGAAAATATTAATGAAATTGCAAGTCAATTAGAAGT
TCCAGTCGTTGTCAAAGAGGTCGGTTTTGGAATATCACAAAAAACCTTTAAAGCACTCGCAAAAACATCTGTCTCAGGAA
TAAATATTGGGGGAGCTGGCGGAACTAATTTTGCTTGGATTGAACGTAAACGGAGTAAAAATGGTTTTAACTTGGATGAA
TTTGGTTTGTCAACGCTTGAGAGCCTTTTAGAAGCTAAAATGGCTGATAATAGAAAAAGTTTGATTGCAACAGGTGGAAT
TACTTCGGCTCAAGAGATTTTTAAATCTTTAATTTTAGGGGCTGATTTGTCAAGTTCTGCTGGTTTTATCTTGAAAAATC
TTATGCAAACAGGGCCTGAAAAAGTAGAAGAAGTTATTGAACAATGGAAACAAGATTTGAATAAATTATTTGTTTTAACT
GGTTCAAAAAATATTGAAGAATGTCGAAAGGTTGAGCTCCTTTACTCGATTAATATGCTTAATTTTATCCAACAAAGAAA
ATAA

Upstream 100 bases:

>100_bases
TATGGAATCAATCTTGAAAAATTTAAGGTTGCTCAAAAAAATAACTGAGATAAGTCTGCTAAAAAGCAGAGTTAGATTTT
AATGAATTGAGAAATAACTG

Downstream 100 bases:

>100_bases
TAAATTACAAATCAAATCATTTGGCAATGGTTTCAAAAACGACTATAATGAGAATAGAATTAAAAAAATAAACTAACTGA
ATTCATTCTCAATCTAGTCA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA
DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA
QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE
FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT
GSKNIEECRKVELLYSINMLNFIQQRK

Sequences:

>Translated_347_residues
MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA
DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA
QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE
FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT
GSKNIEECRKVELLYSINMLNFIQQRK
>Mature_347_residues
MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA
DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA
QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE
FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT
GSKNIEECRKVELLYSINMLNFIQQRK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_LACLA (Q9CIF5)

Other databases:

- EMBL:   AE005176
- PIR:   G86675
- RefSeq:   NP_266563.1
- ProteinModelPortal:   Q9CIF5
- SMR:   Q9CIF5
- GeneID:   1114018
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L11083
- NMPDR:   fig|272623.1.peg.415
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   LLAC272623:L11083-MONOMER
- BRENDA:   5.3.3.2
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38686; Mature: 38686

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00583 PFKB_KINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVF
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHC
GQNFEFPFYIEAMTGGTERADKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVR
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHCCHHHHH
KIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTAQELPMDEGDREFYWLENINE
HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHHH
IASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE
HHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEHHCCCCCCHHH
FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPE
HHHHHHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHH
KVEEVIEQWKQDLNKLFVLTGSKNIEECRKVELLYSINMLNFIQQRK
HHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVF
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHC
GQNFEFPFYIEAMTGGTERADKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVR
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHCCHHHHH
KIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTAQELPMDEGDREFYWLENINE
HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHHH
IASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE
HHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEHHCCCCCCHHH
FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPE
HHHHHHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHH
KVEEVIEQWKQDLNKLFVLTGSKNIEECRKVELLYSINMLNFIQQRK
HHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471