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The map label for this gene is sodA

Identifier: 15672390

GI number: 15672390

Start: 412279

End: 412899

Strand: Direct

Name: sodA

Synonym: L12227

Alternate gene names: 15672390

Gene position: 412279-412899 (Clockwise)

Preceding gene: 15672389

Following gene: 15672391

Centisome position: 17.43

GC content: 37.84

Gene sequence:

>621_bases
ATGGCATTTACATTACCTGAACTTCCATACGCGCCAAATGCGCTTGAACCTTTCTTTGACGAAGCAACAATGCGTTTGCA
TCATGGAAAACATCATCAAACTTATGTGAATAATCTTAATGCAGCAATTGAAAAACATAATGAACTTGATGACCTTAGCC
TTGAAGAATTATTGACAGATTTGTCAGCAATTCCAGAAGACATTCGTACAGCTGTTCGTAACAATGGTGGTGGTCATTTG
AACCATAGTCAATTCTGGCTTTGGCTTCGTCCAAACACTGACGGTTCTGAAAACCATGCTGACGGCGAAATTGGGGATGC
AATTGCGAAAGAATTTGGTAGTTTTGAAACTTTCAAAACAGAATTTAAAGCTGCAGCCACAGGTCGTTTTGGTTCAGGAT
GGGCTTGGTTAGTTGTTGATGAAGCTGGAAAATTGAAAGTTGTATCAACTGCAAATCAAGATAATCCAATTTCTGAAGGG
TTGACACCAGTTTTAGGACTTGATGTTTGGGAACATGCTTACTATCTTAAATATCACAATGTACGTCCTGATTACATTGA
AGCATTCTTTAACCTTGTAAACTGGGATAAAGTTAACGAACTTTATGCTAAAGCAAAATAA

Upstream 100 bases:

>100_bases
AATTAAAAAAATAAACTAACTGAATTCATTCTCAATCTAGTCAAAATACCAAAGTATTAAGACTTCAAAATGGGTTCACA
TCTTAAAAGGAGAAATTACT

Downstream 100 bases:

>100_bases
AATGATGAATGAGGCTCTCCTTTAAGGAGAGCCTTTTTTTATTTTAGAGAAACCTTTTTTAATGTTAGACTATTCTTTTG
GAAATTTATCTTATTTTTAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAFTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHL
NHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVDEAGKLKVVSTANQDNPISEG
LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAKAK

Sequences:

>Translated_206_residues
MAFTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHL
NHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVDEAGKLKVVSTANQDNPISEG
LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAKAK
>Mature_205_residues
AFTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLN
HSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVDEAGKLKVVSTANQDNPISEGL
TPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAKAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=206, Percent_Identity=47.0873786407767, Blast_Score=184, Evalue=6e-47,
Organism=Homo sapiens, GI67782305, Length=206, Percent_Identity=47.0873786407767, Blast_Score=184, Evalue=6e-47,
Organism=Homo sapiens, GI67782309, Length=206, Percent_Identity=39.3203883495146, Blast_Score=144, Evalue=5e-35,
Organism=Escherichia coli, GI1790342, Length=212, Percent_Identity=54.2452830188679, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=46.4646464646465, Blast_Score=174, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=44.9275362318841, Blast_Score=165, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17569479, Length=205, Percent_Identity=42.9268292682927, Blast_Score=159, Evalue=8e-40,
Organism=Saccharomyces cerevisiae, GI6321796, Length=205, Percent_Identity=38.0487804878049, Blast_Score=143, Evalue=2e-35,
Organism=Drosophila melanogaster, GI17136812, Length=206, Percent_Identity=45.1456310679612, Blast_Score=169, Evalue=1e-42,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_LACLA (P0A4J1)

Other databases:

- EMBL:   AE005176
- PIR:   H86675
- RefSeq:   NP_266564.1
- ProteinModelPortal:   P0A4J1
- SMR:   P0A4J1
- GeneID:   1114019
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L12227
- NMPDR:   fig|272623.1.peg.416
- HOGENOM:   HBG507761
- OMA:   WDEVARR
- ProtClustDB:   CLSK697212
- BioCyc:   LLAC272623:L12227-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 23254; Mature: 23123

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTD
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKT
HHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
EFKAAATGRFGSGWAWLVVDEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHN
HHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHCCCHHHHHHHHHHEEEEEECC
VRPDYIEAFFNLVNWDKVNELYAKAK
CCHHHHHHHHHHHCHHHHHHHHHCCC
>Mature Secondary Structure 
AFTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTD
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKT
HHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
EFKAAATGRFGSGWAWLVVDEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHN
HHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHCCCHHHHHHHHHHEEEEEECC
VRPDYIEAFFNLVNWDKVNELYAKAK
CCHHHHHHHHHHHCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471