Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is holB
Identifier: 15672381
GI number: 15672381
Start: 404636
End: 405496
Strand: Direct
Name: holB
Synonym: L0280
Alternate gene names: 15672381
Gene position: 404636-405496 (Clockwise)
Preceding gene: 15672380
Following gene: 15672382
Centisome position: 17.11
GC content: 32.75
Gene sequence:
>861_bases GTGGAAATAAAAGATATTCAGCCTCAACTTTATAAGCAGTTCTCAACGATTTTGCAACATGGAAAATTAAGTCATGCTTA TTTATTTTCAGGGGGATTTGGTTCTTTTGAATTAGCAATCTGGCTGAGCCAAGCCTTATTTTGTGAGAATCCTGAAAATG CTTTGCCTTGTGGTCATTGTCGTTCCTGTCGTCTTGTTGCCCAACAAGAATTTACCGACTTACATATCGTTGAACCTGAT GGACAAACGATTAAAACAGCACAAATTCGAGAACTGACACAAGTTTTCAATGAATCTGGTTATGAGGGAAATCAACAAGT GCTTTTAATTAAGGAAGCTGAAAAAATGCATCCTAATGCAGCAAATGCTTTATTGAAATCAATTGAAGAACCAGAAACAG AAATTGTTGTTTTTTTACTGACAGACAATGAAAATATGATTTTACAAACAATAAAATCACGGACACAAATTATTAATTTT CCAAAAAATGTTCAATACTTACAAGATTTTTTGGAAAAGAATGGTATTTTAAAAACACAAGCAGAACTTCTTGCGGAAAT CTGTAATTCGACTGACAAAGCATTAGAATTAGCTCAGCAGAGCTGGTTTAACGAAGGGCTTCAAAGACTTCAACAATTTG TAAAACTTCTAAAAACATCTGCTGACGAGGCGTTCTTGTATTTGAAAGAATTAGTCGAAATTTTTGATGACAAAGAAAAA CAAAATCAAGCGTTTGAACTTTTATTACAACTTTTTAATCAAGAAAGAATGAGTCAGGAACTTTTAAAAACATTTCAGGC AATAAAAATGTGGAAAAGCAATGTCCGATTTGAGTCAAGTTTAACTTTTCTTGTTTTATGA
Upstream 100 bases:
>100_bases GCTAAAAAATACTTACATTTTTCAAAAAATGAGGATGTTAAATAGTTTTTTTAATTTTGTTATTTAGACTAGATTTGGTA AATATTTAGAAAGGTTTCTT
Downstream 100 bases:
>100_bases AACTTGTCAAACTTATCCTTTGATTGAAAAATCTTATATCAGGAGAATATTATGATTTATGAAATAAAATTTGCACATGG CGAATCAAATGTATTTGCAA
Product: DNA polymerase III subunit delta'
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MEIKDIQPQLYKQFSTILQHGKLSHAYLFSGGFGSFELAIWLSQALFCENPENALPCGHCRSCRLVAQQEFTDLHIVEPD GQTIKTAQIRELTQVFNESGYEGNQQVLLIKEAEKMHPNAANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF PKNVQYLQDFLEKNGILKTQAELLAEICNSTDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFDDKEK QNQAFELLLQLFNQERMSQELLKTFQAIKMWKSNVRFESSLTFLVL
Sequences:
>Translated_286_residues MEIKDIQPQLYKQFSTILQHGKLSHAYLFSGGFGSFELAIWLSQALFCENPENALPCGHCRSCRLVAQQEFTDLHIVEPD GQTIKTAQIRELTQVFNESGYEGNQQVLLIKEAEKMHPNAANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF PKNVQYLQDFLEKNGILKTQAELLAEICNSTDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFDDKEK QNQAFELLLQLFNQERMSQELLKTFQAIKMWKSNVRFESSLTFLVL >Mature_286_residues MEIKDIQPQLYKQFSTILQHGKLSHAYLFSGGFGSFELAIWLSQALFCENPENALPCGHCRSCRLVAQQEFTDLHIVEPD GQTIKTAQIRELTQVFNESGYEGNQQVLLIKEAEKMHPNAANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINF PKNVQYLQDFLEKNGILKTQAELLAEICNSTDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFDDKEK QNQAFELLLQLFNQERMSQELLKTFQAIKMWKSNVRFESSLTFLVL
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria [H]
COG id: COG0470
COG function: function code L; ATPase involved in DNA replication
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786676, Length=136, Percent_Identity=36.0294117647059, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787341, Length=174, Percent_Identity=32.183908045977, Blast_Score=76, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004622 [H]
Pfam domain/function: NA
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 33002; Mature: 33002
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIKDIQPQLYKQFSTILQHGKLSHAYLFSGGFGSFELAIWLSQALFCENPENALPCGHC CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC RSCRLVAQQEFTDLHIVEPDGQTIKTAQIRELTQVFNESGYEGNQQVLLIKEAEKMHPNA CHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHCCCH ANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINFPKNVQYLQDFLEKNGILKTQ HHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH AELLAEICNSTDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFDDKEK HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH QNQAFELLLQLFNQERMSQELLKTFQAIKMWKSNVRFESSLTFLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEC >Mature Secondary Structure MEIKDIQPQLYKQFSTILQHGKLSHAYLFSGGFGSFELAIWLSQALFCENPENALPCGHC CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC RSCRLVAQQEFTDLHIVEPDGQTIKTAQIRELTQVFNESGYEGNQQVLLIKEAEKMHPNA CHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHCCCH ANALLKSIEEPETEIVVFLLTDNENMILQTIKSRTQIINFPKNVQYLQDFLEKNGILKTQ HHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH AELLAEICNSTDKALELAQQSWFNEGLQRLQQFVKLLKTSADEAFLYLKELVEIFDDKEK HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH QNQAFELLLQLFNQERMSQELLKTFQAIKMWKSNVRFESSLTFLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]