Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is rlrD
Identifier: 15672359
GI number: 15672359
Start: 380895
End: 381716
Strand: Reverse
Name: rlrD
Synonym: L0217
Alternate gene names: 15672359
Gene position: 381716-380895 (Counterclockwise)
Preceding gene: 15672365
Following gene: 15672358
Centisome position: 16.14
GC content: 31.75
Gene sequence:
>822_bases ATGTTTTCATTATTTGAGACCTTTATCGTCGTTTATGAAACTAAAAGTTTTACCTTAGCTGGAAAATATTTATTTATTTC CCAACCCACTGTAACCGTGAGAATTAAGAAACTCGAAGAAGAATTAAAATCAACATTATTTTTAAGAGGAAAACACCAAG AAATCATTCCGACTGAAGCCGCCATATTATTCTATCCCAAAGCTATTGCCTATCTAAAAAAATGGGAGGAAGACCAAGCT GAAGTTCAAAAAAAATCTCTTGCAAAACATCCTTTCAAAATTGGGGTTTCACACAGTGCTGCTCTAAGTATTATGCCAGG AATCTTTAAAGTATTTGAAGGCGAGTTGGAACATTTAGATGTAGAAATTAATATGTATGACTCAGAAAAAGTATTTGAAT TAGTTGCAAATCATGATTTACATTTTGGAATCATTGAGCGATTACTCATTAGCGATCAAACCGAAACATTTCCTTTATTT TTAGATGAATTAGTACTTGCCGGAAATACGGATTCAGAAACATTCTTTACCAGAGAATCTGGTTCAGGAATTGGATATTA TATCAAAAGATATCTCAAATCCGCTCCTTCTGCTCAAAGAAACATTGTTCGTATGAATAGCAATGAGATGATTATTTCCC ATATCAAAGCAGGCTTAGGTTCTTCTTTAATTTCTAAATCATTTTTAACTGATGATATCCCTTATCAAGAACTTGGGAGT AATTATCATAGAGAGTTTCTAGGAGTTTCTTTTGATGAAGAAAAAGACCCTATGATTCAAAAATTAATTAGTAAAATAAA AAAAGAAACCGAAATTCATTAG
Upstream 100 bases:
>100_bases ATAATATATAATAGTTGATTTAATTTGTAAAATAAATTATTATAATCATATAAATTAAAAAAAATAATTTGTTATTTTTG TATTTTAGGGAGAAAATCAC
Downstream 100 bases:
>100_bases AATTAATAAAAATAGAAAAACATGAGCAAACTGCTTTTGTTTTTTTTTATTTTTATTAATAATAATGATAAAATAAATTC ATTTTACACATTACAAAAAT
Product: LysR family transcription regulator
Products: NA
Alternate protein names: CysJI operon transcriptional activator [H]
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MFSLFETFIVVYETKSFTLAGKYLFISQPTVTVRIKKLEEELKSTLFLRGKHQEIIPTEAAILFYPKAIAYLKKWEEDQA EVQKKSLAKHPFKIGVSHSAALSIMPGIFKVFEGELEHLDVEINMYDSEKVFELVANHDLHFGIIERLLISDQTETFPLF LDELVLAGNTDSETFFTRESGSGIGYYIKRYLKSAPSAQRNIVRMNSNEMIISHIKAGLGSSLISKSFLTDDIPYQELGS NYHREFLGVSFDEEKDPMIQKLISKIKKETEIH
Sequences:
>Translated_273_residues MFSLFETFIVVYETKSFTLAGKYLFISQPTVTVRIKKLEEELKSTLFLRGKHQEIIPTEAAILFYPKAIAYLKKWEEDQA EVQKKSLAKHPFKIGVSHSAALSIMPGIFKVFEGELEHLDVEINMYDSEKVFELVANHDLHFGIIERLLISDQTETFPLF LDELVLAGNTDSETFFTRESGSGIGYYIKRYLKSAPSAQRNIVRMNSNEMIISHIKAGLGSSLISKSFLTDDIPYQELGS NYHREFLGVSFDEEKDPMIQKLISKIKKETEIH >Mature_273_residues MFSLFETFIVVYETKSFTLAGKYLFISQPTVTVRIKKLEEELKSTLFLRGKHQEIIPTEAAILFYPKAIAYLKKWEEDQA EVQKKSLAKHPFKIGVSHSAALSIMPGIFKVFEGELEHLDVEINMYDSEKVFELVANHDLHFGIIERLLISDQTETFPLF LDELVLAGNTDSETFFTRESGSGIGYYIKRYLKSAPSAQRNIVRMNSNEMIISHIKAGLGSSLISKSFLTDDIPYQELGS NYHREFLGVSFDEEKDPMIQKLISKIKKETEIH
Specific function: Transcriptional activator of the cysJI operon which is involved in sulfur assimilation. Also negatively regulates its own transcription [H]
COG id: COG0583
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=25.4098360655738, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 31257; Mature: 31257
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSLFETFIVVYETKSFTLAGKYLFISQPTVTVRIKKLEEELKSTLFLRGKHQEIIPTEA CHHHHEEEEEEEECCCEEEEEEEEEEECCEEEEEHHHHHHHHHHHHEECCCCCCCCCCCH AILFYPKAIAYLKKWEEDQAEVQKKSLAKHPFKIGVSHSAALSIMPGIFKVFEGELEHLD HEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHEEE VEINMYDSEKVFELVANHDLHFGIIERLLISDQTETFPLFLDELVLAGNTDSETFFTRES EEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECC GSGIGYYIKRYLKSAPSAQRNIVRMNSNEMIISHIKAGLGSSLISKSFLTDDIPYQELGS CCCHHHHHHHHHHHCCCCHHCEEEECCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHCC NYHREFLGVSFDEEKDPMIQKLISKIKKETEIH HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFSLFETFIVVYETKSFTLAGKYLFISQPTVTVRIKKLEEELKSTLFLRGKHQEIIPTEA CHHHHEEEEEEEECCCEEEEEEEEEEECCEEEEEHHHHHHHHHHHHEECCCCCCCCCCCH AILFYPKAIAYLKKWEEDQAEVQKKSLAKHPFKIGVSHSAALSIMPGIFKVFEGELEHLD HEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHEEE VEINMYDSEKVFELVANHDLHFGIIERLLISDQTETFPLFLDELVLAGNTDSETFFTRES EEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECC GSGIGYYIKRYLKSAPSAQRNIVRMNSNEMIISHIKAGLGSSLISKSFLTDDIPYQELGS CCCHHHHHHHHHHHCCCCHHCEEEECCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHCC NYHREFLGVSFDEEKDPMIQKLISKIKKETEIH HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]