Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is ppiA
Identifier: 15672347
GI number: 15672347
Start: 368474
End: 369304
Strand: Reverse
Name: ppiA
Synonym: L168484
Alternate gene names: 15672347
Gene position: 369304-368474 (Counterclockwise)
Preceding gene: 15672355
Following gene: 15672342
Centisome position: 15.61
GC content: 34.66
Gene sequence:
>831_bases ATGAATACGAATAAAAAAAATAATACAATTCTTTTTACAATCTTTGGGATTGTCTTAGTTATTGTCGTTGGACTCCTTGT TTTCTTTGCAAATCGTCCAAAAACAACTGATAATACAGCAAGTAGTACAAGCACTTCTTCAAGCCAAAAAGTTGATTATC CAACAAATTATAAATTACATGATGCAGTAAAAAATTCTACAACTGCCCTTAATGATTTGACTTTGCCACAACTTTCTACA ACTGTTGCTGAGGATGAAGCTGAGGTCGAAATTAAAACGACTGCTGGAAATATCAATATTAAACTTTTCCCTAAATTGGC CCCTAATGCGGTTCAAAATTTCCTTGTTCTTGCCAAAAATGGTTACTACAAAAATAATGAATTCTTCCGTGTCATCAAAG ATTTCATGATTCAATCTGGTGACCCTTCTAATCAAGGAACTGGTACTGCTTCAATTTTTGGTGGGAAAACATTTGATACT GAAATTTCTAATCAACTGTACAATATCCGCGGCGCACTTGCTTTAGCAAATACTGGCCAAGCAAGCTCTAGCAGTTCACA ATTTTTCATTGTGCAAAATTCCCAAGATATGACCAGTCAAATTCAAGACAAGACTAAATATCCTCAAAAAATAATTGATG CTTATAAAAAAGGGGGATACCCAAGTTTAGACGGAAGTTACACTGTCTTTGGTCAAGTTATTTCAGGAATGGATGTCGTT GATAAAATCGCGAAAGCCGAGGTTACATCAAGTGGTTCTGGCGAAGCTTCATCTCCTGTTGACCCTGTAAAAATTAAATC TGTTAAAATTCTTAAAAACTGGAAATTTTAA
Upstream 100 bases:
>100_bases CTTTCGTGATTTTTCTATATTCTATACCTTTTTTTTAGAAATTGCAAGAATTAATTTGATAAAAATTTATAATTACTCAT TTTTATGTTAAAATATTCCT
Downstream 100 bases:
>100_bases TAAATAAAAAGTTACTGACAGAAAATCTGTCAGTAACTTTTTTATTTCAATAAGTTTTTCATATCTTCTGGCATGTCTAA TTCAACATGAACCATTTCGT
Product: peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: PPIase; Rotamase [H]
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MNTNKKNNTILFTIFGIVLVIVVGLLVFFANRPKTTDNTASSTSTSSSQKVDYPTNYKLHDAVKNSTTALNDLTLPQLST TVAEDEAEVEIKTTAGNINIKLFPKLAPNAVQNFLVLAKNGYYKNNEFFRVIKDFMIQSGDPSNQGTGTASIFGGKTFDT EISNQLYNIRGALALANTGQASSSSSQFFIVQNSQDMTSQIQDKTKYPQKIIDAYKKGGYPSLDGSYTVFGQVISGMDVV DKIAKAEVTSSGSGEASSPVDPVKIKSVKILKNWKF
Sequences:
>Translated_276_residues MNTNKKNNTILFTIFGIVLVIVVGLLVFFANRPKTTDNTASSTSTSSSQKVDYPTNYKLHDAVKNSTTALNDLTLPQLST TVAEDEAEVEIKTTAGNINIKLFPKLAPNAVQNFLVLAKNGYYKNNEFFRVIKDFMIQSGDPSNQGTGTASIFGGKTFDT EISNQLYNIRGALALANTGQASSSSSQFFIVQNSQDMTSQIQDKTKYPQKIIDAYKKGGYPSLDGSYTVFGQVISGMDVV DKIAKAEVTSSGSGEASSPVDPVKIKSVKILKNWKF >Mature_276_residues MNTNKKNNTILFTIFGIVLVIVVGLLVFFANRPKTTDNTASSTSTSSSQKVDYPTNYKLHDAVKNSTTALNDLTLPQLST TVAEDEAEVEIKTTAGNINIKLFPKLAPNAVQNFLVLAKNGYYKNNEFFRVIKDFMIQSGDPSNQGTGTASIFGGKTFDT EISNQLYNIRGALALANTGQASSSSSQFFIVQNSQDMTSQIQDKTKYPQKIIDAYKKGGYPSLDGSYTVFGQVISGMDVV DKIAKAEVTSSGSGEASSPVDPVKIKSVKILKNWKF
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]
COG id: COG0652
COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase cyclophilin-type domain [H]
Homologues:
Organism=Homo sapiens, GI24308049, Length=159, Percent_Identity=39.622641509434, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI19557636, Length=186, Percent_Identity=34.9462365591398, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI7706339, Length=178, Percent_Identity=37.0786516853933, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI64276486, Length=184, Percent_Identity=34.2391304347826, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI4505991, Length=153, Percent_Identity=38.562091503268, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI42560244, Length=189, Percent_Identity=33.8624338624339, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI4826932, Length=165, Percent_Identity=35.1515151515151, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4758950, Length=152, Percent_Identity=37.5, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI20911035, Length=160, Percent_Identity=31.25, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI45439316, Length=160, Percent_Identity=33.75, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI22547215, Length=160, Percent_Identity=33.75, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI22547212, Length=160, Percent_Identity=33.75, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7657473, Length=160, Percent_Identity=33.75, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5454154, Length=157, Percent_Identity=35.031847133758, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI303305009, Length=167, Percent_Identity=32.9341317365269, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI5031987, Length=169, Percent_Identity=33.1360946745562, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI150418007, Length=152, Percent_Identity=34.8684210526316, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1789763, Length=193, Percent_Identity=34.7150259067358, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1786736, Length=184, Percent_Identity=34.7826086956522, Blast_Score=85, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71980594, Length=185, Percent_Identity=35.1351351351351, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71980590, Length=160, Percent_Identity=36.875, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71997782, Length=186, Percent_Identity=34.4086021505376, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17506311, Length=184, Percent_Identity=34.7826086956522, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17532641, Length=161, Percent_Identity=35.4037267080745, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17539496, Length=160, Percent_Identity=37.5, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17506307, Length=156, Percent_Identity=37.8205128205128, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17552780, Length=174, Percent_Identity=35.632183908046, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565860, Length=184, Percent_Identity=32.0652173913043, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17539498, Length=154, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17532643, Length=158, Percent_Identity=35.4430379746835, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI32563659, Length=162, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6320359, Length=173, Percent_Identity=33.5260115606936, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323562, Length=176, Percent_Identity=32.3863636363636, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6321848, Length=177, Percent_Identity=31.638418079096, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI17986117, Length=184, Percent_Identity=35.8695652173913, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI19922376, Length=185, Percent_Identity=31.3513513513514, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24652460, Length=161, Percent_Identity=35.4037267080745, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357249, Length=104, Percent_Identity=43.2692307692308, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI19922912, Length=182, Percent_Identity=36.2637362637363, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI20130249, Length=153, Percent_Identity=37.9084967320261, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17647301, Length=182, Percent_Identity=36.2637362637363, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24664125, Length=175, Percent_Identity=33.1428571428571, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357783, Length=175, Percent_Identity=33.1428571428571, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24650807, Length=160, Percent_Identity=34.375, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355677, Length=168, Percent_Identity=30.952380952381, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015891 - InterPro: IPR002130 [H]
Pfam domain/function: PF00160 Pro_isomerase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 29975; Mature: 29975
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNKKNNTILFTIFGIVLVIVVGLLVFFANRPKTTDNTASSTSTSSSQKVDYPTNYKLH CCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH DAVKNSTTALNDLTLPQLSTTVAEDEAEVEIKTTAGNINIKLFPKLAPNAVQNFLVLAKN HHHCCCCHHHCCCCCCHHHHHHCCCCCEEEEEEECCEEEEEEECCCCHHHHHHEEEEECC GYYKNNEFFRVIKDFMIQSGDPSNQGTGTASIFGGKTFDTEISNQLYNIRGALALANTGQ CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHEEEEEECCCC ASSSSSQFFIVQNSQDMTSQIQDKTKYPQKIIDAYKKGGYPSLDGSYTVFGQVISGMDVV CCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHH DKIAKAEVTSSGSGEASSPVDPVKIKSVKILKNWKF HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCC >Mature Secondary Structure MNTNKKNNTILFTIFGIVLVIVVGLLVFFANRPKTTDNTASSTSTSSSQKVDYPTNYKLH CCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH DAVKNSTTALNDLTLPQLSTTVAEDEAEVEIKTTAGNINIKLFPKLAPNAVQNFLVLAKN HHHCCCCHHHCCCCCCHHHHHHCCCCCEEEEEEECCEEEEEEECCCCHHHHHHEEEEECC GYYKNNEFFRVIKDFMIQSGDPSNQGTGTASIFGGKTFDTEISNQLYNIRGALALANTGQ CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHEEEEEECCCC ASSSSSQFFIVQNSQDMTSQIQDKTKYPQKIIDAYKKGGYPSLDGSYTVFGQVISGMDVV CCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHH DKIAKAEVTSSGSGEASSPVDPVKIKSVKILKNWKF HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA