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The map label for this gene is xynD

Identifier: 15672265

GI number: 15672265

Start: 281456

End: 282574

Strand: Direct

Name: xynD

Synonym: L81453

Alternate gene names: 15672265

Gene position: 281456-282574 (Clockwise)

Preceding gene: 15672264

Following gene: 15672266

Centisome position: 11.9

GC content: 35.21

Gene sequence:

>1119_bases
ATGAAACAAAGAAGATTAAAATCAAAAGGAGCAAAAAAAGCTTTTTGGAAGCTTACCTTGCTTATAGGTGCGTTATTAAT
AGTGGTAGCGGGAGTAGGAACCTATTATTATGATCAAGGAGTTCAAAAGCAAAAAATTGCTTATGAAAAACAAGTAGATG
AGGCGAGAAATGCAAAAGACAAGGCCTATGATTCAAGAAAAGCAAACGATATTGAACAGGCTCATAAGTTAATTGATAAG
CTTCATGTTAAAGATAAAACTTCTTTAGATAAATCAATGAGCCAATTGACAAACTATTTGTCAGAGATTGACAAAGTGAA
CCAGATTGTTGCAAAAGCCCATGAAAATATAAGTGAAGAAGGAATAAAAAGCTCTGAAGAGGCTTTAGAATTATTAAAGG
CTCCATATGAGAAATCAGACAAAGAAGCATTGGCAAAACAAGTAAATGCTGACAAACAAATACTTATTGAACGTCAAAAA
GAAGCGGAGCTTATTGCGAACGTTCAAAATCAATATGCAAATAAAAAATTGATTGCCTTGACCTTTGATGATGGACCAAA
CCCTAATACGACCCCTCAATTATTAAAAATTTTTTCAGATGCACAAGTTCCAGCAACCTTTTTTGCTTTAGGAAAACAAG
CCCAAGCCTGCCCCCAAATTATTAAAGAAGAAGCTGATAGAGGAAATGAAGTCGCTTCGCATACATGGGACCATAAAGAC
TTGGTAACACTCTCACCAGACCAACAAAAGCAAGAAATTGAGAGTGCAAATCAGTTAATTAATAAAATTACAGGTAAAAA
CGTAACACTCTTCCGTCCACCTTATGGAAGTTATAATAAATCTGTTTTAAGTCAAACAAATTTAAGTGCAGTTAATTGGA
CTGTTGACACTAATGACTGGCGTTATCGTACAAGTGCTCCAGTTGTTCAAAATGTTTCGACTTACGCTCATGATGGAGCA
ATCATTTTAATGCATGATATTCATCAATGGTCAGTAGATGCGGTGCCACAGATTATTAAAAATTTGAAAGCACAAGGTTA
TACCTTTGTAACGGTCAGCACTTTGCTAACAGTACAAGATGGGGGAGCTAAGGCTCAACAAGTTTATTTTGGTAGATAA

Upstream 100 bases:

>100_bases
ATATGTTAAGATAGGAGGATAGAGTTTTTTAAATCATTCAGTAGTTAAATTGTTACAATTGAACTTTTTTGAAATGATAA
AAGTTATTTAGGGAAGAATA

Downstream 100 bases:

>100_bases
TAAAATAAGAAGAGGAGAAGTGATTCTACTCTTTTTATTCGTCTTTAACGAAGGTTTATTCTAAAAAATTCATATCCAAT
GAGTTTATTCTTGACAACTT

Product: endo-1,4-beta-xylanase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKQRRLKSKGAKKAFWKLTLLIGALLIVVAGVGTYYYDQGVQKQKIAYEKQVDEARNAKDKAYDSRKANDIEQAHKLIDK
LHVKDKTSLDKSMSQLTNYLSEIDKVNQIVAKAHENISEEGIKSSEEALELLKAPYEKSDKEALAKQVNADKQILIERQK
EAELIANVQNQYANKKLIALTFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKD
LVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTNLSAVNWTVDTNDWRYRTSAPVVQNVSTYAHDGA
IILMHDIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTVQDGGAKAQQVYFGR

Sequences:

>Translated_372_residues
MKQRRLKSKGAKKAFWKLTLLIGALLIVVAGVGTYYYDQGVQKQKIAYEKQVDEARNAKDKAYDSRKANDIEQAHKLIDK
LHVKDKTSLDKSMSQLTNYLSEIDKVNQIVAKAHENISEEGIKSSEEALELLKAPYEKSDKEALAKQVNADKQILIERQK
EAELIANVQNQYANKKLIALTFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKD
LVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTNLSAVNWTVDTNDWRYRTSAPVVQNVSTYAHDGA
IILMHDIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTVQDGGAKAQQVYFGR
>Mature_372_residues
MKQRRLKSKGAKKAFWKLTLLIGALLIVVAGVGTYYYDQGVQKQKIAYEKQVDEARNAKDKAYDSRKANDIEQAHKLIDK
LHVKDKTSLDKSMSQLTNYLSEIDKVNQIVAKAHENISEEGIKSSEEALELLKAPYEKSDKEALAKQVNADKQILIERQK
EAELIANVQNQYANKKLIALTFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKD
LVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTNLSAVNWTVDTNDWRYRTSAPVVQNVSTYAHDGA
IILMHDIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTVQDGGAKAQQVYFGR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=157, Percent_Identity=33.7579617834395, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323339, Length=179, Percent_Identity=32.4022346368715, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021729
- InterPro:   IPR011330
- InterPro:   IPR017219
- InterPro:   IPR002509 [H]

Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 41715; Mature: 41715

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRRLKSKGAKKAFWKLTLLIGALLIVVAGVGTYYYDQGVQKQKIAYEKQVDEARNAKD
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
KAYDSRKANDIEQAHKLIDKLHVKDKTSLDKSMSQLTNYLSEIDKVNQIVAKAHENISEE
HHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GIKSSEEALELLKAPYEKSDKEALAKQVNADKQILIERQKEAELIANVQNQYANKKLIAL
CCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKD
EECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCCCC
LVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTNLSAVNWTVDTNDW
EEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEEECCCC
RYRTSAPVVQNVSTYAHDGAIILMHDIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTVQD
EEECCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECC
GGAKAQQVYFGR
CCCCHHHCCCCC
>Mature Secondary Structure
MKQRRLKSKGAKKAFWKLTLLIGALLIVVAGVGTYYYDQGVQKQKIAYEKQVDEARNAKD
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
KAYDSRKANDIEQAHKLIDKLHVKDKTSLDKSMSQLTNYLSEIDKVNQIVAKAHENISEE
HHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GIKSSEEALELLKAPYEKSDKEALAKQVNADKQILIERQKEAELIANVQNQYANKKLIAL
CCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKD
EECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCCCC
LVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTNLSAVNWTVDTNDW
EEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEEECCCC
RYRTSAPVVQNVSTYAHDGAIILMHDIHQWSVDAVPQIIKNLKAQGYTFVTVSTLLTVQD
EEECCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECC
GGAKAQQVYFGR
CCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]