Click here to switch to the map view.

The map label for this gene is ycbJ

Identifier: 15672199

GI number: 15672199

Start: 218600

End: 219826

Strand: Direct

Name: ycbJ

Synonym: L18600

Alternate gene names: 15672199

Gene position: 218600-219826 (Clockwise)

Preceding gene: 15672198

Following gene: 15672200

Centisome position: 9.24

GC content: 34.8

Gene sequence:

>1227_bases
ATGATAGAAACGACTTTGGTAAAAATGAAAAAAATTGATTTAAAAATTATTTTTGTGTTTGTACTGGTAATATTTGGAAT
GTCTTATGAACTTAGGGGATTTGCTGATGATACCAGTTCTCCTACTCCTGTTTATCGGGTTTATAATCCAAGAAATTTAG
AACATTTATATACCTCTAGCCTTAACGAAAAGAATACGTTGGTACGTATTGGTTGGGGGAGGTTTGAGGGAGTAACTTTC
TATGGAAAAAATAATGGTGATACACCTATATATAGGCTTTATAACTTTTCGATTAGGCAGCATCTGTATACTGCTGATCT
TAATGAAGCAAGGGTGTTAAGCCGCAGTGGTTGGAAGAATGAAGGAATTGTTTTTCGAGCGACAGTAGCGGGAAGCGTTC
CAGTATATAGATTGTATAGTTCAAAGATTAAACAGCATTTATTCACTACTGATGCGAACGAGAAAAGAGTTTTAAGTGCT
GGAAATTTTTGGAGATATGAAGGTATTGCTTGGTACGGTGTTTCTGCTACAAATAGTGACTCTGATGATATACTTTTGGT
AAATCATAGAGGTAATCACACAGAGTTTCCAGAGAACTCTGTTGAATCAGTTCTTTCAGCAAAATATTCAGCGGTAGAAA
CTGATATTCAAACAACTTCTGATGGGCAATGGGTTAATATGCATGATGCAACTGTTGATAGAACAACTAATGGACATGGA
GCTGTTGCAGATCTTACTCTTGCCCAAATTCAAAATTTATATCTAAAAAATAATTCTGGTCAAATAACACAGTACAAAGT
TCCAACTTTAGATCAATACCTTGCAGCTTGTAAGCAAAAGGGAGTTATTCCATTAATAGAAATTAAACAGGCAACCGCTA
CCCCTGAACAGTATTCAGATATTGCTATGAAATTTGAACAGTATGGTTTTTCTTCAACAGGGTATATTATTTCAGGTTAT
GAAGAGCCACTAAGTAAGATTGAGTCTTTAATCCCAACAGTTAATGTTATGTATATTGTGGAAGGGTATTCTACTGAAAA
TGTTACTTTTGCAGTATCTTTAGGAATTAAATCTGGACTGGATATGGGATATACTAACATTAATCAGCAGGTGGTTGAGG
CAGTTCATGCATCAGGAATAAAAGTTGGGGCCTGGACAGTTGGAGATATTAATACATTAAAATATTTGCAAAGTATTGGC
GTTGATGTTTTGACTACTAACTATTAA

Upstream 100 bases:

>100_bases
TAAGGGAAATTATAACTGAAAGTGGTCAAAGAAAATTGGTCAGAGTTAATCTGCTATTTGGTTGGATGATTTAAGTAATA
TGGAAAATAAAATATAAATT

Downstream 100 bases:

>100_bases
GGAGATATTTATGAAAGATAATGAAAAACAGAGGATTGTTCTTGTAGCAGGAACATTTGATATATTACATGAAAGTCATA
TCAATATGCTTCGTAATGCG

Product: LPS biosynthesis protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MIETTLVKMKKIDLKIIFVFVLVIFGMSYELRGFADDTSSPTPVYRVYNPRNLEHLYTSSLNEKNTLVRIGWGRFEGVTF
YGKNNGDTPIYRLYNFSIRQHLYTADLNEARVLSRSGWKNEGIVFRATVAGSVPVYRLYSSKIKQHLFTTDANEKRVLSA
GNFWRYEGIAWYGVSATNSDSDDILLVNHRGNHTEFPENSVESVLSAKYSAVETDIQTTSDGQWVNMHDATVDRTTNGHG
AVADLTLAQIQNLYLKNNSGQITQYKVPTLDQYLAACKQKGVIPLIEIKQATATPEQYSDIAMKFEQYGFSSTGYIISGY
EEPLSKIESLIPTVNVMYIVEGYSTENVTFAVSLGIKSGLDMGYTNINQQVVEAVHASGIKVGAWTVGDINTLKYLQSIG
VDVLTTNY

Sequences:

>Translated_408_residues
MIETTLVKMKKIDLKIIFVFVLVIFGMSYELRGFADDTSSPTPVYRVYNPRNLEHLYTSSLNEKNTLVRIGWGRFEGVTF
YGKNNGDTPIYRLYNFSIRQHLYTADLNEARVLSRSGWKNEGIVFRATVAGSVPVYRLYSSKIKQHLFTTDANEKRVLSA
GNFWRYEGIAWYGVSATNSDSDDILLVNHRGNHTEFPENSVESVLSAKYSAVETDIQTTSDGQWVNMHDATVDRTTNGHG
AVADLTLAQIQNLYLKNNSGQITQYKVPTLDQYLAACKQKGVIPLIEIKQATATPEQYSDIAMKFEQYGFSSTGYIISGY
EEPLSKIESLIPTVNVMYIVEGYSTENVTFAVSLGIKSGLDMGYTNINQQVVEAVHASGIKVGAWTVGDINTLKYLQSIG
VDVLTTNY
>Mature_408_residues
MIETTLVKMKKIDLKIIFVFVLVIFGMSYELRGFADDTSSPTPVYRVYNPRNLEHLYTSSLNEKNTLVRIGWGRFEGVTF
YGKNNGDTPIYRLYNFSIRQHLYTADLNEARVLSRSGWKNEGIVFRATVAGSVPVYRLYSSKIKQHLFTTDANEKRVLSA
GNFWRYEGIAWYGVSATNSDSDDILLVNHRGNHTEFPENSVESVLSAKYSAVETDIQTTSDGQWVNMHDATVDRTTNGHG
AVADLTLAQIQNLYLKNNSGQITQYKVPTLDQYLAACKQKGVIPLIEIKQATATPEQYSDIAMKFEQYGFSSTGYIISGY
EEPLSKIESLIPTVNVMYIVEGYSTENVTFAVSLGIKSGLDMGYTNINQQVVEAVHASGIKVGAWTVGDINTLKYLQSIG
VDVLTTNY

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=133, Percent_Identity=36.0902255639098, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI1789858, Length=230, Percent_Identity=24.7826086956522, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 45654; Mature: 45654

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETTLVKMKKIDLKIIFVFVLVIFGMSYELRGFADDTSSPTPVYRVYNPRNLEHLYTSS
CCCCCEEEHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHCC
LNEKNTLVRIGWGRFEGVTFYGKNNGDTPIYRLYNFSIRQHLYTADLNEARVLSRSGWKN
CCCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEHHHHHHEEECCCCHHHHHHCCCCCC
EGIVFRATVAGSVPVYRLYSSKIKQHLFTTDANEKRVLSAGNFWRYEGIAWYGVSATNSD
CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEEEEEECCCCC
SDDILLVNHRGNHTEFPENSVESVLSAKYSAVETDIQTTSDGQWVNMHDATVDRTTNGHG
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCEEECCCCCCC
AVADLTLAQIQNLYLKNNSGQITQYKVPTLDQYLAACKQKGVIPLIEIKQATATPEQYSD
CHHHHHHHHHHEEEEECCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
IAMKFEQYGFSSTGYIISGYEEPLSKIESLIPTVNVMYIVEGYSTENVTFAVSLGIKSGL
HHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCC
DMGYTNINQQVVEAVHASGIKVGAWTVGDINTLKYLQSIGVDVLTTNY
CCCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MIETTLVKMKKIDLKIIFVFVLVIFGMSYELRGFADDTSSPTPVYRVYNPRNLEHLYTSS
CCCCCEEEHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHCC
LNEKNTLVRIGWGRFEGVTFYGKNNGDTPIYRLYNFSIRQHLYTADLNEARVLSRSGWKN
CCCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEHHHHHHEEECCCCHHHHHHCCCCCC
EGIVFRATVAGSVPVYRLYSSKIKQHLFTTDANEKRVLSAGNFWRYEGIAWYGVSATNSD
CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEEEEEECCCCC
SDDILLVNHRGNHTEFPENSVESVLSAKYSAVETDIQTTSDGQWVNMHDATVDRTTNGHG
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCEEECCCCCCC
AVADLTLAQIQNLYLKNNSGQITQYKVPTLDQYLAACKQKGVIPLIEIKQATATPEQYSD
CHHHHHHHHHHEEEEECCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
IAMKFEQYGFSSTGYIISGYEEPLSKIESLIPTVNVMYIVEGYSTENVTFAVSLGIKSGL
HHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCC
DMGYTNINQQVVEAVHASGIKVGAWTVGDINTLKYLQSIGVDVLTTNY
CCCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]