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The map label for this gene is ycbF

Identifier: 15672195

GI number: 15672195

Start: 214748

End: 215887

Strand: Direct

Name: ycbF

Synonym: L14736

Alternate gene names: NA

Gene position: 214748-215887 (Clockwise)

Preceding gene: 15672194

Following gene: 15672196

Centisome position: 9.08

GC content: 31.32

Gene sequence:

>1140_bases
ATGAAGGAAAAAACAGTTGCAATTTTTAATGGTTATTATATTCCCCATCTTGGAGGAGTAGAACGTTATACTTATAACAT
CGCTAAGAAGTTGACTGAAAAGGGTTACCGTGTTATTATCATAACAACCCAACATGATGAAAACTTAACCAATGAAGAAA
TTCAAGAAGGAATAAAAATTTATCGCTTGCCCATAAAAAATCTTTGGAAAAATAGATATCCTTTTTTGAAAAAAAATCGA
ATTTATCATTCATTAATAGAAAAAATTGAAGCAGAATCAATTGATTATTATGTTGCTAATACTCGCTTTCATCTTCCTGC
TATGCTTGGGGTTAAAATGGCAAAAGCAAAAGGAAAAGAAGCGATTGTAATTGAACATGGTTCATCTTACCTGACATTAA
ATAACCCAGTTCTAGACTTTATGCTAAGAAAAATAGAACAATTGCTTATTGGAAGGGTAAAAAAAGACACAAGTTTATTC
TATGGTGTCTCAAATGAAGCATCTGAGTGGTTAAAAACTTTTGATATAAAAGCTAAAGGAGTTCTGCCTAATGCAGTTGC
AGTTGATGAGTATTTTAATCAAAAAATAGAAAAAGATGAGAAGAAACTCACCATCTCCTATGCTGGTCGTCTGATTCCTC
AAATGAAAGGTGTAGAAATACTCCTATCTACTTTTTCTAAACTCTCAAAAGAACGAAAAAATTTAGAATTAATTATTGCT
GGGGATGGGCCACTTTTAAATGAGGTCAAAAGAAAGTATTCGCAAAAAAATATCAAGTTTTTGGGGTATGTTCCTTATGA
AAAAGTATTAGAAATTGATGCTAAATCAGATGTGTTTGTACTCATGTCTCGTAGTGAAGGTTTTGCAACGGCGATGCTAG
AAGCAGCGATGTTAGAGAATGTTATCATAACAACTCCCACTGTTGGAGGGGCTAGAGATATCATGCCTGATGAAACTTAT
GGCTATATTATTGAAAATAATGAAACAAAATTATTTGAAACATTAACAAAAGTTTTAGATAATAAAGAGCATATGAGATT
AATGCAGAAGAAAATTTCTAAAAATGTGTTGGAAAATTTCACATGGGAGCAATCTGCAAAACAATTTATAAAAGTTTTTA
ACGAATTGGATGAAAAATAA

Upstream 100 bases:

>100_bases
TTATCACTCTGTTACTGAGAGGGATTGTTTGGCTAATTATTGTTGCACTATTTTTAGTCGTTACAGGAGAATTTAAGAAA
ATTAAGGAAATGGTAAAAAA

Downstream 100 bases:

>100_bases
TGAAAGAACTCACTAACGAAGAACTTCGGGGAATACAATTAGAACAACTAAAATATATCGACCGGATTTGTCGAGAAAAT
GGTATTGAATATACGCTTGC

Product: LPS biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKEKTVAIFNGYYIPHLGGVERYTYNIAKKLTEKGYRVIIITTQHDENLTNEEIQEGIKIYRLPIKNLWKNRYPFLKKNR
IYHSLIEKIEAESIDYYVANTRFHLPAMLGVKMAKAKGKEAIVIEHGSSYLTLNNPVLDFMLRKIEQLLIGRVKKDTSLF
YGVSNEASEWLKTFDIKAKGVLPNAVAVDEYFNQKIEKDEKKLTISYAGRLIPQMKGVEILLSTFSKLSKERKNLELIIA
GDGPLLNEVKRKYSQKNIKFLGYVPYEKVLEIDAKSDVFVLMSRSEGFATAMLEAAMLENVIITTPTVGGARDIMPDETY
GYIIENNETKLFETLTKVLDNKEHMRLMQKKISKNVLENFTWEQSAKQFIKVFNELDEK

Sequences:

>Translated_379_residues
MKEKTVAIFNGYYIPHLGGVERYTYNIAKKLTEKGYRVIIITTQHDENLTNEEIQEGIKIYRLPIKNLWKNRYPFLKKNR
IYHSLIEKIEAESIDYYVANTRFHLPAMLGVKMAKAKGKEAIVIEHGSSYLTLNNPVLDFMLRKIEQLLIGRVKKDTSLF
YGVSNEASEWLKTFDIKAKGVLPNAVAVDEYFNQKIEKDEKKLTISYAGRLIPQMKGVEILLSTFSKLSKERKNLELIIA
GDGPLLNEVKRKYSQKNIKFLGYVPYEKVLEIDAKSDVFVLMSRSEGFATAMLEAAMLENVIITTPTVGGARDIMPDETY
GYIIENNETKLFETLTKVLDNKEHMRLMQKKISKNVLENFTWEQSAKQFIKVFNELDEK
>Mature_379_residues
MKEKTVAIFNGYYIPHLGGVERYTYNIAKKLTEKGYRVIIITTQHDENLTNEEIQEGIKIYRLPIKNLWKNRYPFLKKNR
IYHSLIEKIEAESIDYYVANTRFHLPAMLGVKMAKAKGKEAIVIEHGSSYLTLNNPVLDFMLRKIEQLLIGRVKKDTSLF
YGVSNEASEWLKTFDIKAKGVLPNAVAVDEYFNQKIEKDEKKLTISYAGRLIPQMKGVEILLSTFSKLSKERKNLELIIA
GDGPLLNEVKRKYSQKNIKFLGYVPYEKVLEIDAKSDVFVLMSRSEGFATAMLEAAMLENVIITTPTVGGARDIMPDETY
GYIIENNETKLFETLTKVLDNKEHMRLMQKKISKNVLENFTWEQSAKQFIKVFNELDEK

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Homo sapiens, GI11863130, Length=392, Percent_Identity=23.469387755102, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17532709, Length=357, Percent_Identity=23.249299719888, Blast_Score=99, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI9755344, Length=391, Percent_Identity=24.2966751918159, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 43748; Mature: 43748

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKTVAIFNGYYIPHLGGVERYTYNIAKKLTEKGYRVIIITTQHDENLTNEEIQEGIKI
CCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCEE
YRLPIKNLWKNRYPFLKKNRIYHSLIEKIEAESIDYYVANTRFHLPAMLGVKMAKAKGKE
EECCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEECHHHHHHHHHHCCCCE
AIVIEHGSSYLTLNNPVLDFMLRKIEQLLIGRVKKDTSLFYGVSNEASEWLKTFDIKAKG
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCEECC
VLPNAVAVDEYFNQKIEKDEKKLTISYAGRLIPQMKGVEILLSTFSKLSKERKNLELIIA
CCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
GDGPLLNEVKRKYSQKNIKFLGYVPYEKVLEIDAKSDVFVLMSRSEGFATAMLEAAMLEN
CCCHHHHHHHHHHHHCCCEEEEECCHHHHEEECCCCCEEEEEECCCCHHHHHHHHHHHCC
VIITTPTVGGARDIMPDETYGYIIENNETKLFETLTKVLDNKEHMRLMQKKISKNVLENF
EEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
TWEQSAKQFIKVFNELDEK
CHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEKTVAIFNGYYIPHLGGVERYTYNIAKKLTEKGYRVIIITTQHDENLTNEEIQEGIKI
CCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCEE
YRLPIKNLWKNRYPFLKKNRIYHSLIEKIEAESIDYYVANTRFHLPAMLGVKMAKAKGKE
EECCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEECHHHHHHHHHHCCCCE
AIVIEHGSSYLTLNNPVLDFMLRKIEQLLIGRVKKDTSLFYGVSNEASEWLKTFDIKAKG
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCEECC
VLPNAVAVDEYFNQKIEKDEKKLTISYAGRLIPQMKGVEILLSTFSKLSKERKNLELIIA
CCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
GDGPLLNEVKRKYSQKNIKFLGYVPYEKVLEIDAKSDVFVLMSRSEGFATAMLEAAMLEN
CCCHHHHHHHHHHHHCCCEEEEECCHHHHEEECCCCCEEEEEECCCCHHHHHHHHHHHCC
VIITTPTVGGARDIMPDETYGYIIENNETKLFETLTKVLDNKEHMRLMQKKISKNVLENF
EEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
TWEQSAKQFIKVFNELDEK
CHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]