BacMap

Definition	Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession	NC_002662
Length	2,365,589

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The map label for this gene is rgpD

Identifier: 15672185

GI number: 15672185

Start: 204357

End: 205553

Strand: Direct

Name: rgpD

Synonym: L4342

Alternate gene names: 15672185

Gene position: 204357-205553 (Clockwise)

Preceding gene: 15672184

Following gene: 15672186

Centisome position: 8.64

GC content: 33.25

Gene sequence:

>1197_bases
ATGAATGACAATATTGCAGTAAAAATAGACCATGTAAGTAAATTCTTTCATCTTCCAACTGAAGCGACAAATAGTCTTAG
AACAACTTTAGTTAACCGTCTTCGGGGAATTAAGGGATATAAAGAACAGCATGTATTAAAAGACATTGATTTCACTGTTG
AAAAAGGTGACTTTTTTGGCATTGTAGGACGCAATGGTTCAGGGAAATCAACATTACTAAAAATCATTTCACAGATCTAT
ACACCAGAAAAAGGCAATGTGATTGTTAATGGTAAATTGGTTTCATTTATTGAACTTGGTGTTGGTTTTAACCCAGAATT
AACTGGTAAAGAAAATGTTTATCTGAATGGAGCAATGCTTGGATTTTCGCGTGAAGAAATTTCAGACATGTATGATGAAA
TTGTTGATTTTGCCGAACTTGAAGAGTTCATGAATCAAAAACTAAAAAATTATTCTTCAGGAATGCAAGTACGTTTAGCT
TTTTCTGTTGCTATTAAAGCTCGAGGAGATGTACTTGTTCTTGACGAAGTGCTTGCCGTTGGAGATGAATCTTTTCAAAG
AAAATGTAACGATTACTTTTTGGAGCGTAAAAAATCAGGAAAAACAACGATTTTAGTTACGCACGATATGGGAGCTGCAA
AGAAATATTGCAATAAAGCAATTCTTATAGAAAATGGATTGATTAAAGTTTCTGGTGATGTAAATGATGTTGCTAATCAG
TATAGTTTGGATAATCTTCAAACAGAAGTGACAGCAAGGTCAGATTTAGAGATTGATGTCAAAGAGGAATGGATTGAAAA
TTTAGAAGTTAATTTCATCAATCAGCAAAAAATTACACCAAATGACGAGGTTAAATTTGAAGTAAGTTATGATGTTAAAA
AGGATACAGAAACATATATTGCTTTTTCATTAACCGATGTGGACCGTAATATTTGGATTTATAATGACAATTCGCTTGAT
TACCTCACAAAAGGGAAGGGGCATAATAGAGCAATTTACACTTGTAAATTAGATCAAGTCAACAACTTAAAACTCAAGTT
ACAAGTATCAATTAGAAATAAGCGGGACGAGATGATTGCTTTTGCAGATGAGAAAGTAATTTTGATTAATCGCAATGATA
TTTCAGATGATGATAAGAGCGCACAGGATTCTGCCACAGGACTAATTCAGCGGAATGGGTCATGGGAGTTTGAATAA

Upstream 100 bases:

>100_bases
CTTATCTTATTATTATTCCATATCTCATTCCATTTATCATTTTTGGAATCGGCTTGTGGATTTTTACAAAAAATTCTAGT
AAATTTGCGGAGATTATCTA

Downstream 100 bases:

>100_bases
AATACAAAATCGAGCTAACAAGCAAAGCAAATATTCTAGACCAGAAAATATTTTTCTATTTTTAATATTGCTTATCGGTT
TTTTTACAATTTCCATTACT

Product: polysaccharide ABC transporter ATP-binding protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MNDNIAVKIDHVSKFFHLPTEATNSLRTTLVNRLRGIKGYKEQHVLKDIDFTVEKGDFFGIVGRNGSGKSTLLKIISQIY
TPEKGNVIVNGKLVSFIELGVGFNPELTGKENVYLNGAMLGFSREEISDMYDEIVDFAELEEFMNQKLKNYSSGMQVRLA
FSVAIKARGDVLVLDEVLAVGDESFQRKCNDYFLERKKSGKTTILVTHDMGAAKKYCNKAILIENGLIKVSGDVNDVANQ
YSLDNLQTEVTARSDLEIDVKEEWIENLEVNFINQQKITPNDEVKFEVSYDVKKDTETYIAFSLTDVDRNIWIYNDNSLD
YLTKGKGHNRAIYTCKLDQVNNLKLKLQVSIRNKRDEMIAFADEKVILINRNDISDDDKSAQDSATGLIQRNGSWEFE

Sequences:

>Translated_398_residues
MNDNIAVKIDHVSKFFHLPTEATNSLRTTLVNRLRGIKGYKEQHVLKDIDFTVEKGDFFGIVGRNGSGKSTLLKIISQIY
TPEKGNVIVNGKLVSFIELGVGFNPELTGKENVYLNGAMLGFSREEISDMYDEIVDFAELEEFMNQKLKNYSSGMQVRLA
FSVAIKARGDVLVLDEVLAVGDESFQRKCNDYFLERKKSGKTTILVTHDMGAAKKYCNKAILIENGLIKVSGDVNDVANQ
YSLDNLQTEVTARSDLEIDVKEEWIENLEVNFINQQKITPNDEVKFEVSYDVKKDTETYIAFSLTDVDRNIWIYNDNSLD
YLTKGKGHNRAIYTCKLDQVNNLKLKLQVSIRNKRDEMIAFADEKVILINRNDISDDDKSAQDSATGLIQRNGSWEFE
>Mature_398_residues
MNDNIAVKIDHVSKFFHLPTEATNSLRTTLVNRLRGIKGYKEQHVLKDIDFTVEKGDFFGIVGRNGSGKSTLLKIISQIY
TPEKGNVIVNGKLVSFIELGVGFNPELTGKENVYLNGAMLGFSREEISDMYDEIVDFAELEEFMNQKLKNYSSGMQVRLA
FSVAIKARGDVLVLDEVLAVGDESFQRKCNDYFLERKKSGKTTILVTHDMGAAKKYCNKAILIENGLIKVSGDVNDVANQ
YSLDNLQTEVTARSDLEIDVKEEWIENLEVNFINQQKITPNDEVKFEVSYDVKKDTETYIAFSLTDVDRNIWIYNDNSLD
YLTKGKGHNRAIYTCKLDQVNNLKLKLQVSIRNKRDEMIAFADEKVILINRNDISDDDKSAQDSATGLIQRNGSWEFE

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=237, Percent_Identity=26.1603375527426, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI31657092, Length=211, Percent_Identity=24.1706161137441, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI116734710, Length=238, Percent_Identity=24.7899159663866, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27262624, Length=253, Percent_Identity=26.0869565217391, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI27262626, Length=253, Percent_Identity=26.0869565217391, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI6005701, Length=237, Percent_Identity=21.9409282700422, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI27477115, Length=214, Percent_Identity=23.3644859813084, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI27436953, Length=230, Percent_Identity=24.3478260869565, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI30795238, Length=214, Percent_Identity=21.4953271028037, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=22.972972972973, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27881501, Length=214, Percent_Identity=21.4953271028037, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI45446740, Length=219, Percent_Identity=23.7442922374429, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI47078218, Length=219, Percent_Identity=23.7442922374429, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI105990541, Length=195, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=23.2876712328767, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=25.3456221198157, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=27.8301886792453, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1786398, Length=279, Percent_Identity=22.2222222222222, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790467, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1789672, Length=206, Percent_Identity=26.2135922330097, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=21.8181818181818, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=24.2152466367713, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=26.6355140186916, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790525, Length=232, Percent_Identity=25, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=24.3362831858407, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790739, Length=216, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1788540, Length=207, Percent_Identity=27.0531400966184, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=22.6851851851852, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=24.6696035242291, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=197, Percent_Identity=24.3654822335025, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=24.390243902439, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=25.5, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=139, Percent_Identity=30.9352517985612, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081782, Length=207, Percent_Identity=23.1884057971014, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=21.8604651162791, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=23.8317757009346, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=24.0740740740741, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=226, Percent_Identity=24.3362831858407, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=213, Percent_Identity=21.1267605633803, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=248, Percent_Identity=25, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=22.1698113207547, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=22.1698113207547, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=22.1698113207547, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=189, Percent_Identity=28.042328042328, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17556528, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=23.8317757009346, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666092, Length=293, Percent_Identity=22.8668941979522, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24582014, Length=196, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582012, Length=196, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=21.1340206185567, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=21.1340206185567, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24643674, Length=235, Percent_Identity=22.5531914893617, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650853, Length=185, Percent_Identity=27.5675675675676, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24650855, Length=185, Percent_Identity=27.5675675675676, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=185, Percent_Identity=27.5675675675676, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648314, Length=198, Percent_Identity=24.2424242424242, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573571, Length=208, Percent_Identity=24.0384615384615, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85725262, Length=285, Percent_Identity=22.8070175438596, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28573573, Length=198, Percent_Identity=23.2323232323232, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 45153; Mature: 45153

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNIAVKIDHVSKFFHLPTEATNSLRTTLVNRLRGIKGYKEQHVLKDIDFTVEKGDFFG
CCCCEEEEEECHHHHEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCEEE
IVGRNGSGKSTLLKIISQIYTPEKGNVIVNGKLVSFIELGVGFNPELTGKENVYLNGAML
EEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEE
GFSREEISDMYDEIVDFAELEEFMNQKLKNYSSGMQVRLAFSVAIKARGDVLVLDEVLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEHHHHC
GDESFQRKCNDYFLERKKSGKTTILVTHDMGAAKKYCNKAILIENGLIKVSGDVNDVANQ
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHH
YSLDNLQTEVTARSDLEIDVKEEWIENLEVNFINQQKITPNDEVKFEVSYDVKKDTETYI
HCCCCCEEEEEECCCCEEEEHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEE
AFSLTDVDRNIWIYNDNSLDYLTKGKGHNRAIYTCKLDQVNNLKLKLQVSIRNKRDEMIA
EEEEEECCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEE
FADEKVILINRNDISDDDKSAQDSATGLIQRNGSWEFE
EECCEEEEEECCCCCCCCCCCCCHHCEEEEECCCCCCC
>Mature Secondary Structure
MNDNIAVKIDHVSKFFHLPTEATNSLRTTLVNRLRGIKGYKEQHVLKDIDFTVEKGDFFG
CCCCEEEEEECHHHHEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCEEE
IVGRNGSGKSTLLKIISQIYTPEKGNVIVNGKLVSFIELGVGFNPELTGKENVYLNGAML
EEECCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEE
GFSREEISDMYDEIVDFAELEEFMNQKLKNYSSGMQVRLAFSVAIKARGDVLVLDEVLAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEHHHHC
GDESFQRKCNDYFLERKKSGKTTILVTHDMGAAKKYCNKAILIENGLIKVSGDVNDVANQ
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHH
YSLDNLQTEVTARSDLEIDVKEEWIENLEVNFINQQKITPNDEVKFEVSYDVKKDTETYI
HCCCCCEEEEEECCCCEEEEHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEE
AFSLTDVDRNIWIYNDNSLDYLTKGKGHNRAIYTCKLDQVNNLKLKLQVSIRNKRDEMIA
EEEEEECCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEE
FADEKVILINRNDISDDDKSAQDSATGLIQRNGSWEFE
EECCEEEEEECCCCCCCCCCCCCHHCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]