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The map label for this gene is rgpC

Identifier: 15672184

GI number: 15672184

Start: 203548

End: 204357

Strand: Direct

Name: rgpC

Synonym: L3425

Alternate gene names: 15672184

Gene position: 203548-204357 (Clockwise)

Preceding gene: 15672183

Following gene: 15672185

Centisome position: 8.6

GC content: 33.83

Gene sequence:

>810_bases
ATGAATTTCTTCAGCCGTAGAAATCAAATTCTACTTAAAGAGCTTGTAAAAACTGACTTTAAATTAAGGTATCAAGGAAG
CCTAATAGGGTATCTTTGGTCAATCTTAAAACCAGTCATGCTATTCGTAATTATGTATCTTGTCTTTGTTCGTTTCTTGC
GCTTCGGTAGTGCAGTTCCTCATTTTGCTGTTGCACTCTTGTTAGCATTGACCTTATGGAATTTCTTTGCTGAAACCACA
AATATGGGGATGCTTTCAGTTGTCTCAAGAGGTGATTTGTTGAGGAAAATTAGCTTCTCAAAACCAATCATAATATTTTC
GGTTGTTGCAAATGCACTAATTAATTTATTAATTAGTTTGGTTGTTGTTGTAATTTTTTCATTTTTAAATGGAATTCATA
TGTCCTGGAATGTTATCTTTGTCCTTCCACTTTTGGTTGAGTTAGTATTATTCGCAACAGGAATTGCTTTCATTTTAGCA
ACTATTTTTGTGAAATTCCGTGACTTGGGTCCCATTTGGGAGGTAGGTATGCAAGCAGGGTTATATGGAACGCCAATTAT
TTATCCAATCATTCAGGTTTCGCAAACACACCCAACAATCGCTAAAATTTTAATGCTGAATCCAATGGCTCAAATTGTCC
AAGATATGCGTTATATCTTGACATTTAGTAATAATACCAATCCGACTTTGTGGCAGATGACAGATAAACCTTATCTTATT
ATTATTCCATATCTCATTCCATTTATCATTTTTGGAATCGGCTTGTGGATTTTTACAAAAAATTCTAGTAAATTTGCGGA
GATTATCTAA

Upstream 100 bases:

>100_bases
ATTCTTGACCGATATAATTTGCGTAAAAACAAAAATTATCATACAAGTATTTTTCGCACACTTATCATCACAAAATTTGC
ATATAAAGGAAAAAAAACAA

Downstream 100 bases:

>100_bases
TGAATGACAATATTGCAGTAAAAATAGACCATGTAAGTAAATTCTTTCATCTTCCAACTGAAGCGACAAATAGTCTTAGA
ACAACTTTAGTTAACCGTCT

Product: polysaccharide ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNFFSRRNQILLKELVKTDFKLRYQGSLIGYLWSILKPVMLFVIMYLVFVRFLRFGSAVPHFAVALLLALTLWNFFAETT
NMGMLSVVSRGDLLRKISFSKPIIIFSVVANALINLLISLVVVVIFSFLNGIHMSWNVIFVLPLLVELVLFATGIAFILA
TIFVKFRDLGPIWEVGMQAGLYGTPIIYPIIQVSQTHPTIAKILMLNPMAQIVQDMRYILTFSNNTNPTLWQMTDKPYLI
IIPYLIPFIIFGIGLWIFTKNSSKFAEII

Sequences:

>Translated_269_residues
MNFFSRRNQILLKELVKTDFKLRYQGSLIGYLWSILKPVMLFVIMYLVFVRFLRFGSAVPHFAVALLLALTLWNFFAETT
NMGMLSVVSRGDLLRKISFSKPIIIFSVVANALINLLISLVVVVIFSFLNGIHMSWNVIFVLPLLVELVLFATGIAFILA
TIFVKFRDLGPIWEVGMQAGLYGTPIIYPIIQVSQTHPTIAKILMLNPMAQIVQDMRYILTFSNNTNPTLWQMTDKPYLI
IIPYLIPFIIFGIGLWIFTKNSSKFAEII
>Mature_269_residues
MNFFSRRNQILLKELVKTDFKLRYQGSLIGYLWSILKPVMLFVIMYLVFVRFLRFGSAVPHFAVALLLALTLWNFFAETT
NMGMLSVVSRGDLLRKISFSKPIIIFSVVANALINLLISLVVVVIFSFLNGIHMSWNVIFVLPLLVELVLFATGIAFILA
TIFVKFRDLGPIWEVGMQAGLYGTPIIYPIIQVSQTHPTIAKILMLNPMAQIVQDMRYILTFSNNTNPTLWQMTDKPYLI
IIPYLIPFIIFGIGLWIFTKNSSKFAEII

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30722; Mature: 30722

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EHHHHHHHHHHHHHHHHEECCCCHHHHCC
>Mature Secondary Structure
MNFFSRRNQILLKELVKTDFKLRYQGSLIGYLWSILKPVMLFVIMYLVFVRFLRFGSAVP
CCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
HFAVALLLALTLWNFFAETTNMGMLSVVSRGDLLRKISFSKPIIIFSVVANALINLLISL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVVVIFSFLNGIHMSWNVIFVLPLLVELVLFATGIAFILATIFVKFRDLGPIWEVGMQAG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
LYGTPIIYPIIQVSQTHPTIAKILMLNPMAQIVQDMRYILTFSNNTNPTLWQMTDKPYLI
CCCCCHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHEECCCCCCEEEEECCCCEEE
IIPYLIPFIIFGIGLWIFTKNSSKFAEII
EHHHHHHHHHHHHHHHHEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]