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The map label for this gene is rmaD

Identifier: 15672095

GI number: 15672095

Start: 115022

End: 115513

Strand: Reverse

Name: rmaD

Synonym: L115025

Alternate gene names: 15672095

Gene position: 115513-115022 (Counterclockwise)

Preceding gene: 15672096

Following gene: 15672089

Centisome position: 4.88

GC content: 33.94

Gene sequence:

>492_bases
ATGACCTCAGCAGACCTAAACCAACAAATCTCAAAAGAATTGCATGAGTTACGACATGCAACTGACAATCGTTCTCAGGA
AAGAAGCTGGATTTTAGCTCAATTAGATAATGATAAATTGGAAAAAGAAGTTTTGACTTTGTCAGTTGTTGCCCTTCACA
TTTTGTCAGCTTTGACCAAAGAAGATTTAACCGGTATTGAATTAGCCACAAAATTATCCGTCACTCGTGGCGGAGTGACT
CGTGCTGTCCAAAATTTAATCAAATATCAGTTTTTAACTACTTATCAATCTGAAAGTGATAAAAAGAAAATTTTCTATCA
CCTGACAGTCAAAGGTCGAAAAGTAGCGACCATTCACGATAAAATGCATAAAATCATGGATATTAGACTTGGACAAATTT
TCGATAAATATAATGAACAAGAAAAATCAATTATTTTGAGCTTTCTGTCTGATTTCAATCTGACAGAAGCAGGACTTTTT
GATTCAGAATAA

Upstream 100 bases:

>100_bases
GAACGTGCGGATGAATTAAAAGAAAAAGCATTTACCAGTGCAGAAAATTTTGGGAAAGCCTTCTAATTCCCTTTTATTGT
ATAATGTAAGCATGGATAAG

Downstream 100 bases:

>100_bases
GTCAAAAAAACCTAGCAAATCAATTTGCTAGAGTTTTTTATTTTGCTTCATAATGAAAATCTGGGTTCAATTCTTTATCA
AGTTCTGCAAAAGCAACTTC

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTSADLNQQISKELHELRHATDNRSQERSWILAQLDNDKLEKEVLTLSVVALHILSALTKEDLTGIELATKLSVTRGGVT
RAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLTEAGLF
DSE

Sequences:

>Translated_163_residues
MTSADLNQQISKELHELRHATDNRSQERSWILAQLDNDKLEKEVLTLSVVALHILSALTKEDLTGIELATKLSVTRGGVT
RAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLTEAGLF
DSE
>Mature_162_residues
TSADLNQQISKELHELRHATDNRSQERSWILAQLDNDKLEKEVLTLSVVALHILSALTKEDLTGIELATKLSVTRGGVTR
AVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLTEAGLFD
SE

Specific function: Involved in protein secretion [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18695; Mature: 18563

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSADLNQQISKELHELRHATDNRSQERSWILAQLDNDKLEKEVLTLSVVALHILSALTK
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
EDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHD
HCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEHHHHH
KMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLTEAGLFDSE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TSADLNQQISKELHELRHATDNRSQERSWILAQLDNDKLEKEVLTLSVVALHILSALTK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
EDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHD
HCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEHHHHH
KMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLTEAGLFDSE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]