Click here to switch to the map view.

The map label for this gene is yagA

Identifier: 15672046

GI number: 15672046

Start: 65571

End: 66416

Strand: Reverse

Name: yagA

Synonym: L1007

Alternate gene names: 15672046

Gene position: 66416-65571 (Counterclockwise)

Preceding gene: 15672047

Following gene: 15672045

Centisome position: 2.81

GC content: 33.92

Gene sequence:

>846_bases
ATGTCCGGCTTCACAAAAATAGTTTTTAAACTTCATAATTTTCTTGACAGAAATAAGATCAAAAATAATTTGAAATTCAA
GCCAAGCCTCACTTCTAAAACATTGGTTTTTGCTCATCGTGGTTCTAAATCCAACTGTCCAGAAAATACATTGGCCGCTT
TTCATGAAGCTGTTCGTGTCCATGCTGACGGAATTGAGCTTGATGTCCACTTATCACTCGATAATGAATTAATTGTTATT
CACGATGAGAAAATTGACCGGACAACAAATGGTAAAGGTCTTGTCAAAAATATGAATGCTGTAGATTTAAAGAAATTTGA
TGCTGGTTCTTGGTTCAATCCAAAATTTACTGACGAAAAAATTCCAACTTTGTCAGAGGTTTTAAAATTACTTACAGACC
TATCATTTACTGGTTATTTAAATATCGAAATTAAAACTGATAAATTTGACTATCCCGGAATTGAAAAAAAACTCTCAGAC
TTAATGAAAGAAACTAAATGGCCCTTTAGCTATATTTATAGTTCGTTTAATTTTGATTCATTAAAAAAAATACACACTTT
TGATTCAAAGGCTGAAGTTAATTATCTGACAAAAAATCTTTTGACCCTAAAAAGTCATTATAAAGGCAGCTCAACAGATT
TTATTTCAGGAATTCATCCCCGAAGAACCTACGCCTTCAAGCACCCACTTCTTCTCAAAAGTTCAAAAAGACCCCTTCGT
CTTTGGACAGTTAATCAAGAAACAGAAATACGACAAGCTTTTCAACAACATGTAGCTGGAATCATCACCGATTTTCCGGA
ACGTGCCCTCGAAATTCGTCGAGAAATCCAAGACCAGTCAAAATAG

Upstream 100 bases:

>100_bases
ACAAGGAAACTCATCTTTAATTTTTACTGACAGACCCTATCAGTGCTTCTTTTATGGCCTTGTCAGTAAAAATTATTCTC
AAATCGAAAGGAAGTGACTA

Downstream 100 bases:

>100_bases
ACTGGTCTTTTTTTCATCTATCACAAATGATATCTATTTCACAATATTTTGAGGTGAAAATCACATAGTACAGTAATTGT
AAGCGTAAAGCATTTCTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSGFTKIVFKLHNFLDRNKIKNNLKFKPSLTSKTLVFAHRGSKSNCPENTLAAFHEAVRVHADGIELDVHLSLDNELIVI
HDEKIDRTTNGKGLVKNMNAVDLKKFDAGSWFNPKFTDEKIPTLSEVLKLLTDLSFTGYLNIEIKTDKFDYPGIEKKLSD
LMKETKWPFSYIYSSFNFDSLKKIHTFDSKAEVNYLTKNLLTLKSHYKGSSTDFISGIHPRRTYAFKHPLLLKSSKRPLR
LWTVNQETEIRQAFQQHVAGIITDFPERALEIRREIQDQSK

Sequences:

>Translated_281_residues
MSGFTKIVFKLHNFLDRNKIKNNLKFKPSLTSKTLVFAHRGSKSNCPENTLAAFHEAVRVHADGIELDVHLSLDNELIVI
HDEKIDRTTNGKGLVKNMNAVDLKKFDAGSWFNPKFTDEKIPTLSEVLKLLTDLSFTGYLNIEIKTDKFDYPGIEKKLSD
LMKETKWPFSYIYSSFNFDSLKKIHTFDSKAEVNYLTKNLLTLKSHYKGSSTDFISGIHPRRTYAFKHPLLLKSSKRPLR
LWTVNQETEIRQAFQQHVAGIITDFPERALEIRREIQDQSK
>Mature_280_residues
SGFTKIVFKLHNFLDRNKIKNNLKFKPSLTSKTLVFAHRGSKSNCPENTLAAFHEAVRVHADGIELDVHLSLDNELIVIH
DEKIDRTTNGKGLVKNMNAVDLKKFDAGSWFNPKFTDEKIPTLSEVLKLLTDLSFTGYLNIEIKTDKFDYPGIEKKLSDL
MKETKWPFSYIYSSFNFDSLKKIHTFDSKAEVNYLTKNLLTLKSHYKGSSTDFISGIHPRRTYAFKHPLLLKSSKRPLRL
WTVNQETEIRQAFQQHVAGIITDFPERALEIRREIQDQSK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=273, Percent_Identity=24.5421245421245, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706617, Length=140, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI260763880, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI260763878, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789858, Length=149, Percent_Identity=34.8993288590604, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 32466; Mature: 32334

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFTKIVFKLHNFLDRNKIKNNLKFKPSLTSKTLVFAHRGSKSNCPENTLAAFHEAVRV
CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
HADGIELDVHLSLDNELIVIHDEKIDRTTNGKGLVKNMNAVDLKKFDAGSWFNPKFTDEK
CCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCC
IPTLSEVLKLLTDLSFTGYLNIEIKTDKFDYPGIEKKLSDLMKETKWPFSYIYSSFNFDS
CCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHH
LKKIHTFDSKAEVNYLTKNLLTLKSHYKGSSTDFISGIHPRRTYAFKHPLLLKSSKRPLR
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCEEECCCCCCEE
LWTVNQETEIRQAFQQHVAGIITDFPERALEIRREIQDQSK
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGFTKIVFKLHNFLDRNKIKNNLKFKPSLTSKTLVFAHRGSKSNCPENTLAAFHEAVRV
CHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
HADGIELDVHLSLDNELIVIHDEKIDRTTNGKGLVKNMNAVDLKKFDAGSWFNPKFTDEK
CCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCC
IPTLSEVLKLLTDLSFTGYLNIEIKTDKFDYPGIEKKLSDLMKETKWPFSYIYSSFNFDS
CCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHH
LKKIHTFDSKAEVNYLTKNLLTLKSHYKGSSTDFISGIHPRRTYAFKHPLLLKSSKRPLR
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCEEECCCCCCEE
LWTVNQETEIRQAFQQHVAGIITDFPERALEIRREIQDQSK
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]