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The map label for this gene is pdhD

Identifier: 15672041

GI number: 15672041

Start: 58971

End: 60389

Strand: Reverse

Name: pdhD

Synonym: L0036

Alternate gene names: 15672041

Gene position: 60389-58971 (Counterclockwise)

Preceding gene: 15672042

Following gene: 15672037

Centisome position: 2.55

GC content: 39.25

Gene sequence:

>1419_bases
ATGGTTGTTGGTGCACAAGCAACAGAAGTTGATTTGGTTGTTATTGGTTCAGGCCCTGGTGGTTATGTTGCAGCCATCCG
TGCGGCTGAACTTGGTAAAAAAGTTACAATTATTGAAAAAGATAATGTTGGTGGGGTTTGTTTAAATATTGGTTGTATCC
CATCAAAAGCATTGATTAATATTGGTCATCATTACCAAGAATCTTTGGAGGAAGAAAAAGGAGAAAATCCTTTTGGTCTT
TCTGTCGGAAATGTTAAATTAAACTGGGAATCTGCCCAAAAATGGAAACAAGATAAAGTTGTCAACCAGTTGACAGGTGG
TGTTAAAATGCTACTTAAAAAACACAAAGTTGACGTGATTCAAGGAACTGCAGAATTTATTGATAACAATACAATAAATG
TTGAACAAGAAGATGGGTTCCAACTTTTGCAATTTAATGATGTGATTATCTCAACTGGTTCACGTCCTATCGAAATTCCT
TCTTTCCCATTTGGTGGTCGCATTATTGACTCTACTGGTGCTTTGTCACTTCCAGAAGTTCCTAAACATTTGATTATTGT
TGGGGGAGGAGTTATTGGTTCTGAGCTTGGTGGAGCATACCGTATGCTCGGTTCTAAGATTACAATTGTTGAAGGTTTGG
ACCACATTTTAAACGGGTTTGATAAAGAAATGTCTGATATCATTGCTAATCGCGTTAAATCTGCTGGTTCTGAAATCTTT
ACTTCAGCAATGGCTAAATCAGCTACTCAAACTGATAAAGATGTAACTTTGACTTTTGAGGTTGACGGAAAAGAACAAAC
GGTGACTGGTGATTACTTACTCGTTTCTGTTGGACGTCGTCCAAATACTGATTTAATCGGCTTGAACAACACTGATGTTA
AATTGACTGACCGTGGTTTGATTGAAGTTGACGATTCTTATGCAACTAATGTTCCTCACATTTATGCAATCGGTGATGTG
GTTCCTGGTCCAATGCTCGCTCACAAAGCTTCTTTCCAAGCTAAAGTTGCTGCTGCTGCGATTGCTGGAGCTGAGGACGA
CGTGGACTTACACGTTGCTTTGCCTGCTGTAGCTTATACAACAACTGAATTAGCAACAGTTGGAGAAACGCCTGAATCAG
TTAAAGACCGTAAAGATGTTAAAATTTCTAAGTTCCCATTTGCTGCAAATGGCCGTGCCATTTCAATGAATGATACGACT
GGTTTCTTACGTTTGATTACTGAAACTAAAGAAGGGGCCTTAATCGGTGCTCAAATCGTTGGCCCTGGTGCATCTGACTT
GATTTCTGGTTTATCACTAGCGATTGAAAATGGATTGACTTCTAAAGACATTTCATTGACTATCCAACCTCACCCAACAC
TTGGTGAAGCGATTATGGATACAGCTGAATTGGCTGATGGCTTACCAATTCACGTTTAA

Upstream 100 bases:

>100_bases
AAATATCATTTTCGTTTCTTTCTGTCATAGATTTTAAAAACTAGTTTACAGTATTGTAAATTCAAGTTGACACTAATGTT
TACAAGAAAGAGGATATATT

Downstream 100 bases:

>100_bases
TAAAATTAAAAATCACTGACGGATTTGTCAGTGATTTTTTCTATGGATAAATTTACTAACGGAAAATCTGTCAGTAAATT
TTTGTAAGTGTGATATCAGA

Product: dihydrolipoamide dehydrogenase

Products: NA

Alternate protein names: Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MVVGAQATEVDLVVIGSGPGGYVAAIRAAELGKKVTIIEKDNVGGVCLNIGCIPSKALINIGHHYQESLEEEKGENPFGL
SVGNVKLNWESAQKWKQDKVVNQLTGGVKMLLKKHKVDVIQGTAEFIDNNTINVEQEDGFQLLQFNDVIISTGSRPIEIP
SFPFGGRIIDSTGALSLPEVPKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKSAGSEIF
TSAMAKSATQTDKDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDLIGLNNTDVKLTDRGLIEVDDSYATNVPHIYAIGDV
VPGPMLAHKASFQAKVAAAAIAGAEDDVDLHVALPAVAYTTTELATVGETPESVKDRKDVKISKFPFAANGRAISMNDTT
GFLRLITETKEGALIGAQIVGPGASDLISGLSLAIENGLTSKDISLTIQPHPTLGEAIMDTAELADGLPIHV

Sequences:

>Translated_472_residues
MVVGAQATEVDLVVIGSGPGGYVAAIRAAELGKKVTIIEKDNVGGVCLNIGCIPSKALINIGHHYQESLEEEKGENPFGL
SVGNVKLNWESAQKWKQDKVVNQLTGGVKMLLKKHKVDVIQGTAEFIDNNTINVEQEDGFQLLQFNDVIISTGSRPIEIP
SFPFGGRIIDSTGALSLPEVPKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKSAGSEIF
TSAMAKSATQTDKDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDLIGLNNTDVKLTDRGLIEVDDSYATNVPHIYAIGDV
VPGPMLAHKASFQAKVAAAAIAGAEDDVDLHVALPAVAYTTTELATVGETPESVKDRKDVKISKFPFAANGRAISMNDTT
GFLRLITETKEGALIGAQIVGPGASDLISGLSLAIENGLTSKDISLTIQPHPTLGEAIMDTAELADGLPIHV
>Mature_472_residues
MVVGAQATEVDLVVIGSGPGGYVAAIRAAELGKKVTIIEKDNVGGVCLNIGCIPSKALINIGHHYQESLEEEKGENPFGL
SVGNVKLNWESAQKWKQDKVVNQLTGGVKMLLKKHKVDVIQGTAEFIDNNTINVEQEDGFQLLQFNDVIISTGSRPIEIP
SFPFGGRIIDSTGALSLPEVPKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKSAGSEIF
TSAMAKSATQTDKDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDLIGLNNTDVKLTDRGLIEVDDSYATNVPHIYAIGDV
VPGPMLAHKASFQAKVAAAAIAGAEDDVDLHVALPAVAYTTTELATVGETPESVKDRKDVKISKFPFAANGRAISMNDTT
GFLRLITETKEGALIGAQIVGPGASDLISGLSLAIENGLTSKDISLTIQPHPTLGEAIMDTAELADGLPIHV

Specific function: Lipoamide dehydrogenase is a component of the alpha- ketoacid dehydrogenase complexes [H]

COG id: COG1249

COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI91199540, Length=468, Percent_Identity=39.1025641025641, Blast_Score=310, Evalue=2e-84,
Organism=Homo sapiens, GI50301238, Length=464, Percent_Identity=28.8793103448276, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI291045266, Length=463, Percent_Identity=27.2138228941685, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI22035672, Length=472, Percent_Identity=27.9661016949153, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI291045268, Length=458, Percent_Identity=26.4192139737991, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI148277065, Length=456, Percent_Identity=25.219298245614, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI33519430, Length=456, Percent_Identity=25.219298245614, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI33519428, Length=456, Percent_Identity=25.219298245614, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI33519426, Length=456, Percent_Identity=25.219298245614, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI148277071, Length=456, Percent_Identity=25.219298245614, Blast_Score=130, Evalue=3e-30,
Organism=Escherichia coli, GI1786307, Length=466, Percent_Identity=40.5579399141631, Blast_Score=325, Evalue=5e-90,
Organism=Escherichia coli, GI87082354, Length=461, Percent_Identity=31.0195227765727, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1789915, Length=441, Percent_Identity=29.7052154195011, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI87081717, Length=459, Percent_Identity=28.5403050108932, Blast_Score=170, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI32565766, Length=464, Percent_Identity=40.0862068965517, Blast_Score=325, Evalue=5e-89,
Organism=Caenorhabditis elegans, GI17557007, Length=481, Percent_Identity=26.4033264033264, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71983429, Length=447, Percent_Identity=25.9507829977629, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71983419, Length=447, Percent_Identity=25.9507829977629, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71982272, Length=481, Percent_Identity=27.027027027027, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17559934, Length=225, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321091, Length=477, Percent_Identity=38.3647798742138, Blast_Score=292, Evalue=1e-79,
Organism=Saccharomyces cerevisiae, GI6325240, Length=481, Percent_Identity=30.1455301455301, Blast_Score=188, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6325166, Length=468, Percent_Identity=27.7777777777778, Blast_Score=159, Evalue=7e-40,
Organism=Drosophila melanogaster, GI21358499, Length=473, Percent_Identity=39.9577167019027, Blast_Score=318, Evalue=4e-87,
Organism=Drosophila melanogaster, GI17737741, Length=478, Percent_Identity=26.1506276150628, Blast_Score=135, Evalue=7e-32,
Organism=Drosophila melanogaster, GI24640553, Length=501, Percent_Identity=27.1457085828343, Blast_Score=135, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24640549, Length=486, Percent_Identity=27.1604938271605, Blast_Score=135, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24640551, Length=484, Percent_Identity=27.2727272727273, Blast_Score=134, Evalue=1e-31,

Paralogues:

None

Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR006258
- InterPro:   IPR004099
- InterPro:   IPR012999
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]

EC number: =1.8.1.4 [H]

Molecular weight: Translated: 49867; Mature: 49867

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00076 PYRIDINE_REDOX_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVGAQATEVDLVVIGSGPGGYVAAIRAAELGKKVTIIEKDNVGGVCLNIGCIPSKALIN
CEECCCCCEEEEEEEECCCCCEEEEEEHHHCCCEEEEEEECCCCEEEEEECCCCCHHHHH
IGHHYQESLEEEKGENPFGLSVGNVKLNWESAQKWKQDKVVNQLTGGVKMLLKKHKVDVI
CCHHHHHHHHHHCCCCCCCEEECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEE
QGTAEFIDNNTINVEQEDGFQLLQFNDVIISTGSRPIEIPSFPFGGRIIDSTGALSLPEV
ECHHHHHCCCEEEEECCCCEEEEEECEEEEECCCCCEECCCCCCCCEEECCCCCCCCCCC
PKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKSAGSEIF
CCEEEEEECCEECHHCCHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSAMAKSATQTDKDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDLIGLNNTDVKLTDRGL
HHHHHHHCCCCCCCEEEEEEECCCCEEEECCEEEEEECCCCCCCEEECCCCCEEEECCCE
IEVDDSYATNVPHIYAIGDVVPGPMLAHKASFQAKVAAAAIAGAEDDVDLHVALPAVAYT
EEECCCCCCCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEE
TTELATVGETPESVKDRKDVKISKFPFAANGRAISMNDTTGFLRLITETKEGALIGAQIV
HHHHEECCCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEE
GPGASDLISGLSLAIENGLTSKDISLTIQPHPTLGEAIMDTAELADGLPIHV
CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVVGAQATEVDLVVIGSGPGGYVAAIRAAELGKKVTIIEKDNVGGVCLNIGCIPSKALIN
CEECCCCCEEEEEEEECCCCCEEEEEEHHHCCCEEEEEEECCCCEEEEEECCCCCHHHHH
IGHHYQESLEEEKGENPFGLSVGNVKLNWESAQKWKQDKVVNQLTGGVKMLLKKHKVDVI
CCHHHHHHHHHHCCCCCCCEEECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEE
QGTAEFIDNNTINVEQEDGFQLLQFNDVIISTGSRPIEIPSFPFGGRIIDSTGALSLPEV
ECHHHHHCCCEEEEECCCCEEEEEECEEEEECCCCCEECCCCCCCCEEECCCCCCCCCCC
PKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKSAGSEIF
CCEEEEEECCEECHHCCHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSAMAKSATQTDKDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDLIGLNNTDVKLTDRGL
HHHHHHHCCCCCCCEEEEEEECCCCEEEECCEEEEEECCCCCCCEEECCCCCEEEECCCE
IEVDDSYATNVPHIYAIGDVVPGPMLAHKASFQAKVAAAAIAGAEDDVDLHVALPAVAYT
EEECCCCCCCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEE
TTELATVGETPESVKDRKDVKISKFPFAANGRAISMNDTTGFLRLITETKEGALIGAQIV
HHHHEECCCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEE
GPGASDLISGLSLAIENGLTSKDISLTIQPHPTLGEAIMDTAELADGLPIHV
CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2200674; 2253629; 6896188; 8805537 [H]