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The map label for this gene is deoC

Identifier: 13358150

GI number: 13358150

Start: 732938

End: 733585

Strand: Reverse

Name: deoC

Synonym: UU585

Alternate gene names: 13358150

Gene position: 733585-732938 (Counterclockwise)

Preceding gene: 13358151

Following gene: 13358149

Centisome position: 97.59

GC content: 27.78

Gene sequence:

>648_bases
ATGAATAAGTATAATATTTATGTAGATCACACATTATTAAAAGCTGACGCAAGTTTAGAAGAGATTCATAAGTTGTGTGA
AGAAGCAGAAGAAAATGAATTTTATTCAGTTTGTATTAATCCTTGTTTTGTTAAAGTTGCAAAACACTATTTATTAGAAA
CGTCTGTTAAAATTTGCACAGTTATTGGTTTTCCACTAGGCGCTAACACAATTGAAACTAAAGTTTTTGAAACAAAAAAC
GCTATAGATTTAGGTGCTGATGAAATTGATATGGTTATTAATATTAATCAATTAATCAATGGTAATAGAGAATATTGCTT
AAATGAAATTAATCAAATTAAAGAAGTTTGTGGGGATAAAATTTTAAAAGTGATCGTTGAAACAGCATTTTTGAACAGGG
AGCAAAAAGAATTTGCAGCTAAAATTATTCTAGAATCAAATGCTGATTTCATTAAAACATCAACTGGTTTTGCAAAAGAA
GGTGCAAAACTTGAAGATATTATTCTATGAAAGCGAATTTTAGGTGATGTAAAACAAATTAAAGCATCAGGTGGAATTAA
AAATTTTGAGGATTTTAAATCTTTTATTGAAGCTGGAGCTACAAGGATCGGAACGTCATCAGCAATTAAAATATTAAATA
ATCACTAA

Upstream 100 bases:

>100_bases
AATTTGGGCGTAGTGCAGATGGTGATAAATTAATGAATGAATTTGGTTTTAGTGTTAAAAATATTATTAATCAACTTTTA
AACCAATAATAAGGAATATC

Downstream 100 bases:

>100_bases
AAAACAAAAAGAAGGTTTTGCATCTAAACCTTTTTTTGTTTACTTAATAAATACTGGAAGTAAAATTTAAATTTATTATT
CCAAAAATTACACTATAATT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNKYNIYVDHTLLKADASLEEIHKLCEEAEENEFYSVCINPCFVKVAKHYLLETSVKICTVIGFPLGANTIETKVFETKN
AIDLGADEIDMVININQLINGNREYCLNEINQIKEVCGDKILKVIVETAFLNREQKEFAAKIILESNADFIKTSTGFAKE
GAKLEDIILWKRILGDVKQIKASGGIKNFEDFKSFIEAGATRIGTSSAIKILNNH

Sequences:

>Translated_215_residues
MNKYNIYVDHTLLKADASLEEIHKLCEEAEENEFYSVCINPCFVKVAKHYLLETSVKICTVIGFPLGANTIETKVFETKN
AIDLGADEIDMVININQLINGNREYCLNEINQIKEVCGDKILKVIVETAFLNREQKEFAAKIILESNADFIKTSTGFAKE
GAKLEDIIL*KRILGDVKQIKASGGIKNFEDFKSFIEAGATRIGTSSAIKILNNH
>Mature_215_residues
MNKYNIYVDHTLLKADASLEEIHKLCEEAEENEFYSVCINPCFVKVAKHYLLETSVKICTVIGFPLGANTIETKVFETKN
AIDLGADEIDMVININQLINGNREYCLNEINQIKEVCGDKILKVIVETAFLNREQKEFAAKIILESNADFIKTSTGFAKE
GAKLEDIIL*KRILGDVKQIKASGGIKNFEDFKSFIEAGATRIGTSSAIKILNNH

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=217, Percent_Identity=28.110599078341, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1790841, Length=202, Percent_Identity=31.6831683168317, Blast_Score=85, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=208, Percent_Identity=28.3653846153846, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19922098, Length=223, Percent_Identity=29.1479820627803, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23905; Mature: 23905

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYNIYVDHTLLKADASLEEIHKLCEEAEENEFYSVCINPCFVKVAKHYLLETSVKICT
CCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGFPLGANTIETKVFETKNAIDLGADEIDMVININQLINGNREYCLNEINQIKEVCGDK
HCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
ILKVIVETAFLNREQKEFAAKIILESNADFIKTSTGFAKEGAKLEDIILKRILGDVKQIK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASGGIKNFEDFKSFIEAGATRIGTSSAIKILNNH
HCCCCCCHHHHHHHHHHCCHHCCCHHHHHHHCCC
>Mature Secondary Structure
MNKYNIYVDHTLLKADASLEEIHKLCEEAEENEFYSVCINPCFVKVAKHYLLETSVKICT
CCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGFPLGANTIETKVFETKNAIDLGADEIDMVININQLINGNREYCLNEINQIKEVCGDK
HCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
ILKVIVETAFLNREQKEFAAKIILESNADFIKTSTGFAKEGAKLEDIILKRILGDVKQIK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
ASGGIKNFEDFKSFIEAGATRIGTSSAIKILNNH
HCCCCCCHHHHHHHHHHCCHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA