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The map label for this gene is oppB

Identifier: 13358126

GI number: 13358126

Start: 702661

End: 703794

Strand: Reverse

Name: oppB

Synonym: UU562

Alternate gene names: 13358126

Gene position: 703794-702661 (Counterclockwise)

Preceding gene: 13358127

Following gene: 13358125

Centisome position: 93.62

GC content: 29.37

Gene sequence:

>1134_bases
ATGAATCAGAAAAACAGCTTTGAAGCTAATTCATCGCAAAACAATTATGGTGAATTGCCAATATTAAACCAAAAAAAACG
AGTTAATTATTCATTTAGTAATAATTTTATTATTTTTGGTGGTGGTCGTTCACTAAAAACAGCAGCAGATCGCGATCGTG
TTGTTGATCCATTAATCGATTTTTTCACTTTTGATTCAAAGTTTATGACATTTATTATTAAATCTTTGAAATTAATTGCT
GAATTTTTCTTATTAGCTTGAATTGTAATTACAATTACATTCTTTTTAATTAACTCAGTACCTGGAGAATCTGCTTTAAC
GATCGGGATTACATCACCAGAAGCGAAAAAAGCCATTCTAGCACAGTATGGTTTAGATCGTCCAATAGGCGTTCGTTATG
TTAATTATTTAGCAAATATTTTTAGAGGAGAATTTGGAGTAAGTACTTCAATTCGCCCAGGGGTTGAAATTAATTCATTT
ATTTGATCTCGTTATTTAGTAAGTTTTGCTGTTGGAATTTTTTCAGTATTATTAACTCTAGTTATTGGAATCCCTTTAGG
TATTTTTGTTGGGCGTAAACCAGGAGGTATATTAGATAGTGTATCAACCGTTATTATTTCTGTAATTTCAGCTGTACCTT
CGCTTGTATTTGGGTTAATCTTGTTATTAATTGGTAAAGAAGTTGGATTACCATTTACGTTTGATATTAATAATTTTGTG
ACTTATATTTTACCAGGGTTAGCATTATCACTTGGTTCAATTATTGTTTATGTGCAATATATTAAAGTTGAAATGAATCG
TGAATTAAACTCAATGCATGCGAAATTTGCGTATTTAAAAGGTGCAACTGTTAACCGTTTTGTGTGATTACATGCTTTAA
AACCATCATTATTCCCAATTGCAACATTCTTTCCATTTGTAATTTTAGGATCATTTGTTGGAGCGTTGTTTATTGAACAA
ATTTTTCAAATTCCAGGTTCAGGTTCATTATTTTTTGAAGCAATTATCTCAAAAGATTACAACGTGATTTTATTATTAGT
AATTATTTATTCATTAATTACAATTATTGGTTATACAATTCGAGATGCTTTATATCAAATTATTGATCCACGTATAAGAA
GAGGAGGAAAATAA

Upstream 100 bases:

>100_bases
TTACAATTATCATTTTACCTAGTTTTATTTATGCATTAGCTTGTATGATTGCTTATATTATTAAAACCACACAATCAATT
ACTTAAAATAGGAGATTTAT

Downstream 100 bases:

>100_bases
ATTTATGGCGAAGTTTGGAGAATATTTAAAACAAAAATCAAAAAGTATTACTTCATCATTTATAGATGAATTAACATCTG
ATGCACCAAATAAGTTTTTA

Product: oligopeptide transport system permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNQKNSFEANSSQNNYGELPILNQKKRVNYSFSNNFIIFGGGRSLKTAADRDRVVDPLIDFFTFDSKFMTFIIKSLKLIA
EFFLLAWIVITITFFLINSVPGESALTIGITSPEAKKAILAQYGLDRPIGVRYVNYLANIFRGEFGVSTSIRPGVEINSF
IWSRYLVSFAVGIFSVLLTLVIGIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDINNFV
TYILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFVWLHALKPSLFPIATFFPFVILGSFVGALFIEQ
IFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDALYQIIDPRIRRGGK

Sequences:

>Translated_377_residues
MNQKNSFEANSSQNNYGELPILNQKKRVNYSFSNNFIIFGGGRSLKTAADRDRVVDPLIDFFTFDSKFMTFIIKSLKLIA
EFFLLA*IVITITFFLINSVPGESALTIGITSPEAKKAILAQYGLDRPIGVRYVNYLANIFRGEFGVSTSIRPGVEINSF
I*SRYLVSFAVGIFSVLLTLVIGIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDINNFV
TYILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFV*LHALKPSLFPIATFFPFVILGSFVGALFIEQ
IFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDALYQIIDPRIRRGGK
>Mature_377_residues
MNQKNSFEANSSQNNYGELPILNQKKRVNYSFSNNFIIFGGGRSLKTAADRDRVVDPLIDFFTFDSKFMTFIIKSLKLIA
EFFLLA*IVITITFFLINSVPGESALTIGITSPEAKKAILAQYGLDRPIGVRYVNYLANIFRGEFGVSTSIRPGVEINSF
I*SRYLVSFAVGIFSVLLTLVIGIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDINNFV
TYILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFV*LHALKPSLFPIATFFPFVILGSFVGALFIEQ
IFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDALYQIIDPRIRRGGK

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=309, Percent_Identity=31.0679611650485, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=25.2199413489736, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=27.9365079365079, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=27.3684210526316, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789888, Length=268, Percent_Identity=25.3731343283582, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787761, Length=340, Percent_Identity=26.1764705882353, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41311; Mature: 41311

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKNSFEANSSQNNYGELPILNQKKRVNYSFSNNFIIFGGGRSLKTAADRDRVVDPLID
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHH
FFTFDSKFMTFIIKSLKLIAEFFLLAIVITITFFLINSVPGESALTIGITSPEAKKAILA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
QYGLDRPIGVRYVNYLANIFRGEFGVSTSIRPGVEINSFISRYLVSFAVGIFSVLLTLVI
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDINNFVTY
HHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
ILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFVLHALKPSLFPIATF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
FPFVILGSFVGALFIEQIFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LYQIIDPRIRRGGK
HHHHHCHHHHCCCC
>Mature Secondary Structure
MNQKNSFEANSSQNNYGELPILNQKKRVNYSFSNNFIIFGGGRSLKTAADRDRVVDPLID
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHH
FFTFDSKFMTFIIKSLKLIAEFFLLAIVITITFFLINSVPGESALTIGITSPEAKKAILA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
QYGLDRPIGVRYVNYLANIFRGEFGVSTSIRPGVEINSFISRYLVSFAVGIFSVLLTLVI
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDINNFVTY
HHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
ILPGLALSLGSIIVYVQYIKVEMNRELNSMHAKFAYLKGATVNRFVLHALKPSLFPIATF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
FPFVILGSFVGALFIEQIFQIPGSGSLFFEAIISKDYNVILLLVIIYSLITIIGYTIRDA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LYQIIDPRIRRGGK
HHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]