| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13358090
GI number: 13358090
Start: 651761
End: 653272
Strand: Reverse
Name: Not Available
Synonym: UU526
Alternate gene names: 13358090
Gene position: 653272-651761 (Counterclockwise)
Preceding gene: 13358091
Following gene: 13358089
Centisome position: 86.9
GC content: 28.31
Gene sequence:
>1512_bases ATGAAATTATTGAAAAATAAGAAATTTTGAGCTATATCATTAGGTTCAATAATAGTTAGTACAAGTATTATTGCTACAGC TACTGCTTGTACTAACTCTAATATCGAATCAACTGTAAGTTCATCTTTTGTTAGAACTCAAAATGGTGTTTATGCAATTT ATGAGATTACAAATTGAACTAAATTAGATGATAACCAAAAAAAATCATTACAAAATCTTAATTTTAAAACTAGTGTTATT GATAAAGATAATAATGCTGAATTTACATCATCTACAGGGATTTTAAGGGATGGTAGAGTTTATGTAAAATTAGCACGTGA ACCAAAAAAAGATGATCGTGTAATTATTAAACCAGATGATGCTAATTTAAAAAAAGGTGCTGTTTATGTAACAACACTAA ATATAAGCAATATTGAATTAAATGATGGACCAAAGGTTCAAATAAGTCATAGTAATGAAAAAAATGAAATAAAATCATAT AATAGTGCAGAATCAATTATTTACAACCAACGTTGATTAGCTAATATTTGAAACACATTAAGTGCTGAAAAAGATGGGAT GCTATTAACAGAGTATAATAGTGCAAAACACCAATTTGATGCAATGATTAAACAAAGTGATTTTGATACAAGTAAAGTAA AAGTAGAAAAAGATTCAAATGGTAATATTACAAAGGTAACAGTTTCTAATCCTGAAAGTAATAAGGCAATTCCTGTAGTA TTTATGGATATTGATGAAACAATTTTAAATAATTACGCTAATCAAAACTATCAATTATTAAATAATAAAGCTTATAATCC AAAGGATTGAGATGCATTTGTGAATGACAAGGTTTCAAAACGATTAGCTGGAGCTTTTGAATTCATTAAATATGTTTGAG AACATGGTGGAGTCGTAATGTTCAACTCAAACCGTGAACAAGAAAACCAAGTCGATCCAACTATTGAAAACTTGGTTAGT GAAGGCTTAGAACGTAGTTTATTACCTAAATGAATTTTTTGAATGCAAGGAGTAGATTTTAGTAGCGATAAACCATGAGC AAATATTAAAAAAGATGCACAAGGAAAACGTGTAAAATCTACTAAAGAAGACCGTATGAATGCTATGAATAAGCGTACAC AAGGTTATGATTTAAGTGAATTCGGTAGTGGTAATGCTGTAGTTTTAAAAACTGTAATGCGTATTGGTGATAATTTTGAT GACTTTAATGATAATGCTTCAAAAGGTAAACTTAATAGTGAACGTGTAGCATTATTAAAAGAATATGGTAAATTATTTGG TAATTTTGATATAAATAATAAAGGTGTTAAATACGAAAAAAATCAAAACGGTCAAATGGTGAAATCTGATGAAACTTGAT CAGAATCTTATGTATTAATAGGTGGTAATTCATCTTATGGTGGTTTTGAAGCAGGAATCGCTAAAGGCTATTATGGATTA GGCAAAGAAGGTCAAGCTAAAGCACTAAAAGATTACATAAAACAACTATATTGAGAACCAAAAAGCAAATAA
Upstream 100 bases:
>100_bases ATTAATATTTTTAATTTTTCATTACTTTATAATTGGTTTTTCATACTATAATTTTGGTATTAAAAATTTAAAAAAGATGT TTTTTGTTTAAGGAGTTTTT
Downstream 100 bases:
>100_bases ATAATTTTTAATTTCATATTTAAATCCTAAAAAAAGAGTAAAAAATTTGTTTTTGCTCTTTTTTATTTACTTTTATAATT TTTTCGTTTATAATTTGTAA
Product: MBA N-terminal paralog
Products: NA
Alternate protein names: Outer membrane protein P4; OMP P4 [H]
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MKLLKNKKFWAISLGSIIVSTSIIATATACTNSNIESTVSSSFVRTQNGVYAIYEITNWTKLDDNQKKSLQNLNFKTSVI DKDNNAEFTSSTGILRDGRVYVKLAREPKKDDRVIIKPDDANLKKGAVYVTTLNISNIELNDGPKVQISHSNEKNEIKSY NSAESIIYNQRWLANIWNTLSAEKDGMLLTEYNSAKHQFDAMIKQSDFDTSKVKVEKDSNGNITKVTVSNPESNKAIPVV FMDIDETILNNYANQNYQLLNNKAYNPKDWDAFVNDKVSKRLAGAFEFIKYVWEHGGVVMFNSNREQENQVDPTIENLVS EGLERSLLPKWIFWMQGVDFSSDKPWANIKKDAQGKRVKSTKEDRMNAMNKRTQGYDLSEFGSGNAVVLKTVMRIGDNFD DFNDNASKGKLNSERVALLKEYGKLFGNFDINNKGVKYEKNQNGQMVKSDETWSESYVLIGGNSSYGGFEAGIAKGYYGL GKEGQAKALKDYIKQLYWEPKSK
Sequences:
>Translated_503_residues MKLLKNKKF*AISLGSIIVSTSIIATATACTNSNIESTVSSSFVRTQNGVYAIYEITN*TKLDDNQKKSLQNLNFKTSVI DKDNNAEFTSSTGILRDGRVYVKLAREPKKDDRVIIKPDDANLKKGAVYVTTLNISNIELNDGPKVQISHSNEKNEIKSY NSAESIIYNQR*LANI*NTLSAEKDGMLLTEYNSAKHQFDAMIKQSDFDTSKVKVEKDSNGNITKVTVSNPESNKAIPVV FMDIDETILNNYANQNYQLLNNKAYNPKD*DAFVNDKVSKRLAGAFEFIKYV*EHGGVVMFNSNREQENQVDPTIENLVS EGLERSLLPK*IF*MQGVDFSSDKP*ANIKKDAQGKRVKSTKEDRMNAMNKRTQGYDLSEFGSGNAVVLKTVMRIGDNFD DFNDNASKGKLNSERVALLKEYGKLFGNFDINNKGVKYEKNQNGQMVKSDET*SESYVLIGGNSSYGGFEAGIAKGYYGL GKEGQAKALKDYIKQLY*EPKSK >Mature_503_residues MKLLKNKKF*AISLGSIIVSTSIIATATACTNSNIESTVSSSFVRTQNGVYAIYEITN*TKLDDNQKKSLQNLNFKTSVI DKDNNAEFTSSTGILRDGRVYVKLAREPKKDDRVIIKPDDANLKKGAVYVTTLNISNIELNDGPKVQISHSNEKNEIKSY NSAESIIYNQR*LANI*NTLSAEKDGMLLTEYNSAKHQFDAMIKQSDFDTSKVKVEKDSNGNITKVTVSNPESNKAIPVV FMDIDETILNNYANQNYQLLNNKAYNPKD*DAFVNDKVSKRLAGAFEFIKYV*EHGGVVMFNSNREQENQVDPTIENLVS EGLERSLLPK*IF*MQGVDFSSDKP*ANIKKDAQGKRVKSTKEDRMNAMNKRTQGYDLSEFGSGNAVVLKTVMRIGDNFD DFNDNASKGKLNSERVALLKEYGKLFGNFDINNKGVKYEKNQNGQMVKSDET*SESYVLIGGNSSYGGFEAGIAKGYYGL GKEGQAKALKDYIKQLY*EPKSK
Specific function: Unknown
COG id: COG2503
COG function: function code R; Predicted secreted acid phosphatase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005519 - InterPro: IPR023214 - InterPro: IPR006423 [H]
Pfam domain/function: PF03767 Acid_phosphat_B [H]
EC number: NA
Molecular weight: Translated: 54580; Mature: 54580
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLKNKKFAISLGSIIVSTSIIATATACTNSNIESTVSSSFVRTQNGVYAIYEITNTKL CCCCCCCCEEEEHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCC DDNQKKSLQNLNFKTSVIDKDNNAEFTSSTGILRDGRVYVKLAREPKKDDRVIIKPDDAN CCCHHHHHHCCCCEEEEEECCCCCCEECCCCCEECCEEEEEEECCCCCCCEEEECCCCCC LKKGAVYVTTLNISNIELNDGPKVQISHSNEKNEIKSYNSAESIIYNQRLANINTLSAEK CCCCEEEEEEEEEEEEEECCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHCCCEEECCCC DGMLLTEYNSAKHQFDAMIKQSDFDTSKVKVEKDSNGNITKVTVSNPESNKAIPVVFMDI CCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC DETILNNYANQNYQLLNNKAYNPKDDAFVNDKVSKRLAGAFEFIKYVEHGGVVMFNSNRE CHHHHHHHCCCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCC QENQVDPTIENLVSEGLERSLLPKIFMQGVDFSSDKPANIKKDAQGKRVKSTKEDRMNAM CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NKRTQGYDLSEFGSGNAVVLKTVMRIGDNFDDFNDNASKGKLNSERVALLKEYGKLFGNF HHHCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC DINNKGVKYEKNQNGQMVKSDETSESYVLIGGNSSYGGFEAGIAKGYYGLGKEGQAKALK CCCCCCEEEEECCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHH DYIKQLYEPKSK HHHHHHCCCCCC >Mature Secondary Structure MKLLKNKKFAISLGSIIVSTSIIATATACTNSNIESTVSSSFVRTQNGVYAIYEITNTKL CCCCCCCCEEEEHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCC DDNQKKSLQNLNFKTSVIDKDNNAEFTSSTGILRDGRVYVKLAREPKKDDRVIIKPDDAN CCCHHHHHHCCCCEEEEEECCCCCCEECCCCCEECCEEEEEEECCCCCCCEEEECCCCCC LKKGAVYVTTLNISNIELNDGPKVQISHSNEKNEIKSYNSAESIIYNQRLANINTLSAEK CCCCEEEEEEEEEEEEEECCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHCCCEEECCCC DGMLLTEYNSAKHQFDAMIKQSDFDTSKVKVEKDSNGNITKVTVSNPESNKAIPVVFMDI CCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC DETILNNYANQNYQLLNNKAYNPKDDAFVNDKVSKRLAGAFEFIKYVEHGGVVMFNSNRE CHHHHHHHCCCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCC QENQVDPTIENLVSEGLERSLLPKIFMQGVDFSSDKPANIKKDAQGKRVKSTKEDRMNAM CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NKRTQGYDLSEFGSGNAVVLKTVMRIGDNFDDFNDNASKGKLNSERVALLKEYGKLFGNF HHHCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC DINNKGVKYEKNQNGQMVKSDETSESYVLIGGNSSYGGFEAGIAKGYYGLGKEGQAKALK CCCCCCEEEEECCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHH DYIKQLYEPKSK HHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1715322; 7542800 [H]