| Definition | Borrelia burgdorferi B31 plasmid lp38, complete sequence. |
|---|---|
| Accession | NC_001856 |
| Length | 38,829 |
Click here to switch to the map view.
The map label for this gene is lolD [C]
Identifier: 11496838
GI number: 11496838
Start: 19313
End: 20008
Strand: Direct
Name: lolD [C]
Synonym: BBJ26
Alternate gene names: 11496838
Gene position: 19313-20008 (Clockwise)
Preceding gene: 11496869
Following gene: 11496870
Centisome position: 49.74
GC content: 32.04
Gene sequence:
>696_bases GTGGGGAATGTTAATTTAGATTTAAAATTGGTTAATAAAAAATACAAAATTGGACAAGAAATTATTCATGCAAATAAGGA TATTTCACTTAATTTAAAATCAAGGGACATGGTTTGGATTTCAGGGCCTACGGGGAGCGGCAAGACAACTTTAATGAATT TGCTTTCTGGAATAGATTCTCTTGATACAGGGGAGATCCGCTTCAACTCAACTCTTTTAAGTTCAATGAATGAAAAGGAT AGAACTTTGTTTAGAAGGTATAACGTAGGGTTAATCTTTCAGCATTTTGAGCTTATCCCAAGTCTTACAGGTTTTGACAA TATTTCATTACCTCTAAGATTCTCAAGAGAAAGTGCTAAGCGATTAAAGTCTAAAGCGGAAGAATTGATAGAATTTTTCA AACTTTCAAAGTTTGTGAATAAAAAACCTAGATATATGTCTGGAGGACAAAGGCAAAGGATAGGAATAGCAAGAGCCTTT GTTTATGATCCCAAATTAATAATTGGAGATGAAATAACTAGTCATTTGGACAAAGAAACAGCTATTTTTGTTTATACTTC AATACAAAAGTATCTTAAAGAGAAGAATGCAATTGGGATTTTTGTTTCTCATGATTATAATTTAAAAAATTTGGCTAATA AACTTTATAGAATAGAAGATGGAGTGCTGTCTTTAGTGGGGGGTGAGTGTGTTTAA
Upstream 100 bases:
>100_bases TTATCATTTGGATTTTTATTAAGTTCAATAATTTTTGAGTGATATTTTTTTGGTAAAGCTTTTTAAATTTTATGGTTGAA TTTGAAATATAGGAGGTTTT
Downstream 100 bases:
>100_bases ATTGGCTTTTTACAATATCTTTAGAGATTTAAGGCGTACAATCATATTATCTTTACTTCTAGCAAGTTCTGTGGTATTTT TATTGGTTTTTGTTGGATAT
Product: ABC transporter, ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MGNVNLDLKLVNKKYKIGQEIIHANKDISLNLKSRDMVWISGPTGSGKTTLMNLLSGIDSLDTGEIRFNSTLLSSMNEKD RTLFRRYNVGLIFQHFELIPSLTGFDNISLPLRFSRESAKRLKSKAEELIEFFKLSKFVNKKPRYMSGGQRQRIGIARAF VYDPKLIIGDEITSHLDKETAIFVYTSIQKYLKEKNAIGIFVSHDYNLKNLANKLYRIEDGVLSLVGGECV
Sequences:
>Translated_231_residues MGNVNLDLKLVNKKYKIGQEIIHANKDISLNLKSRDMVWISGPTGSGKTTLMNLLSGIDSLDTGEIRFNSTLLSSMNEKD RTLFRRYNVGLIFQHFELIPSLTGFDNISLPLRFSRESAKRLKSKAEELIEFFKLSKFVNKKPRYMSGGQRQRIGIARAF VYDPKLIIGDEITSHLDKETAIFVYTSIQKYLKEKNAIGIFVSHDYNLKNLANKLYRIEDGVLSLVGGECV >Mature_230_residues GNVNLDLKLVNKKYKIGQEIIHANKDISLNLKSRDMVWISGPTGSGKTTLMNLLSGIDSLDTGEIRFNSTLLSSMNEKDR TLFRRYNVGLIFQHFELIPSLTGFDNISLPLRFSRESAKRLKSKAEELIEFFKLSKFVNKKPRYMSGGQRQRIGIARAFV YDPKLIIGDEITSHLDKETAIFVYTSIQKYLKEKNAIGIFVSHDYNLKNLANKLYRIEDGVLSLVGGECV
Specific function: Part Of The Abc Transporter Complex Lolcde Involved In The Translocation Of Mature Outer Membrane-Directed Lipoproteins, From The Inner Membrane To The Periplasmic Chaperone, Lola. Responsible For The Formation Of The Lola-Lipoprotein Complex In An ATP-De
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=214, Percent_Identity=31.7757009345794, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI171184400, Length=211, Percent_Identity=26.0663507109005, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI46592964, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592915, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592971, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592956, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592978, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI46592898, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI42741659, Length=228, Percent_Identity=25.8771929824561, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI215820660, Length=209, Percent_Identity=28.7081339712919, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI20143975, Length=209, Percent_Identity=28.7081339712919, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9955968, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9955966, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI45243524, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI116734710, Length=193, Percent_Identity=23.3160621761658, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9961252, Length=203, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=154, Percent_Identity=33.1168831168831, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=203, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961250, Length=203, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27262624, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI27262626, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI45446740, Length=218, Percent_Identity=26.605504587156, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI47078218, Length=218, Percent_Identity=26.605504587156, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=30.316742081448, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1788761, Length=183, Percent_Identity=35.5191256830601, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=32.6530612244898, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787105, Length=216, Percent_Identity=32.4074074074074, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082267, Length=225, Percent_Identity=25.7777777777778, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=27.1493212669683, Blast_Score=111, Evalue=3e-26, Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=30.6666666666667, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1787370, Length=205, Percent_Identity=27.8048780487805, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=31.5315315315315, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=34.2391304347826, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=30.316742081448, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1787089, Length=200, Percent_Identity=31.5, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1789672, Length=180, Percent_Identity=34.4444444444444, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=28.9099526066351, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=28.5, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789032, Length=211, Percent_Identity=28.436018957346, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787712, Length=184, Percent_Identity=30.4347826086957, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789891, Length=187, Percent_Identity=33.1550802139037, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=26.1306532663317, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1786563, Length=183, Percent_Identity=30.6010928961749, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790544, Length=210, Percent_Identity=31.4285714285714, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788450, Length=200, Percent_Identity=28, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=28.125, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=27.3972602739726, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787500, Length=212, Percent_Identity=30.6603773584906, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786698, Length=216, Percent_Identity=28.2407407407407, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788506, Length=204, Percent_Identity=32.843137254902, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48994997, Length=202, Percent_Identity=29.2079207920792, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787759, Length=214, Percent_Identity=29.4392523364486, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789962, Length=217, Percent_Identity=28.110599078341, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787143, Length=227, Percent_Identity=29.5154185022026, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790525, Length=208, Percent_Identity=25.4807692307692, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786253, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI145693107, Length=191, Percent_Identity=30.8900523560209, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=27.5675675675676, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=24.4131455399061, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787547, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787112, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790534, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787758, Length=163, Percent_Identity=33.7423312883436, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1788644, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1786654, Length=163, Percent_Identity=30.0613496932515, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789991, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48994943, Length=188, Percent_Identity=25, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789586, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788210, Length=186, Percent_Identity=28.494623655914, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786981, Length=202, Percent_Identity=26.2376237623762, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI48994883, Length=196, Percent_Identity=26.530612244898, Blast_Score=63, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=29.2237442922374, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17533971, Length=207, Percent_Identity=29.951690821256, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17543740, Length=207, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=29.3838862559242, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211017, Length=209, Percent_Identity=29.6650717703349, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=209, Percent_Identity=29.6650717703349, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565938, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211015, Length=209, Percent_Identity=29.6650717703349, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115533592, Length=204, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202349, Length=164, Percent_Identity=32.3170731707317, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115534520, Length=204, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=206, Percent_Identity=26.2135922330097, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567265, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25146777, Length=209, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193208177, Length=208, Percent_Identity=26.4423076923077, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115535101, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567269, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17511077, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71992285, Length=235, Percent_Identity=26.3829787234043, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=188, Percent_Identity=30.8510638297872, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324985, Length=186, Percent_Identity=30.1075268817204, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI85726357, Length=229, Percent_Identity=27.5109170305677, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85724864, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24580555, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI85816269, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24580553, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24653245, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI85724858, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI85724856, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24580547, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24580551, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24580549, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24580545, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI281363262, Length=213, Percent_Identity=25.8215962441315, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI161076684, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581617, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581615, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076682, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574533, Length=236, Percent_Identity=26.6949152542373, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=228, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26258; Mature: 26127
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNVNLDLKLVNKKYKIGQEIIHANKDISLNLKSRDMVWISGPTGSGKTTLMNLLSGIDS CCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCC LDTGEIRFNSTLLSSMNEKDRTLFRRYNVGLIFQHFELIPSLTGFDNISLPLRFSRESAK CCCCCEEECHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECHHHHH RLKSKAEELIEFFKLSKFVNKKPRYMSGGQRQRIGIARAFVYDPKLIIGDEITSHLDKET HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEHEEECCCEEECCHHHHHCCCCC AIFVYTSIQKYLKEKNAIGIFVSHDYNLKNLANKLYRIEDGVLSLVGGECV EEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCHHHHHCCCCCC >Mature Secondary Structure GNVNLDLKLVNKKYKIGQEIIHANKDISLNLKSRDMVWISGPTGSGKTTLMNLLSGIDS CCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCC LDTGEIRFNSTLLSSMNEKDRTLFRRYNVGLIFQHFELIPSLTGFDNISLPLRFSRESAK CCCCCEEECHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECHHHHH RLKSKAEELIEFFKLSKFVNKKPRYMSGGQRQRIGIARAFVYDPKLIIGDEITSHLDKET HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEHEEECCCEEECCHHHHHCCCCC AIFVYTSIQKYLKEKNAIGIFVSHDYNLKNLANKLYRIEDGVLSLVGGECV EEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087; 11402022; 12150914 [H]