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The map label for this gene is yvdT

Identifier: 16080501

GI number: 16080501

Start: 3540822

End: 3541406

Strand: Direct

Name: yvdT

Synonym: BSU34480

Alternate gene names: 16080501

Gene position: 3540822-3541406 (Clockwise)

Preceding gene: 16080500

Following gene: 16080502

Centisome position: 83.99

GC content: 39.49

Gene sequence:

>585_bases
ATGCCAAAACAAACATCGGGTAAATACGAAAAAATATTGCAGGCGGCCATAGAAGTCATTTCTGAAAAAGGCCTCGACAA
AGCTTCTATTTCTGATATTGTCAAAAAGGCCGGCACTGCCCAAGGAACATTCTATTTGTATTTTTCATCTAAAAATGCCC
TCATACCGGCCATTGCAGAAAATCTCCTCACCCATACACTTGATCAAATCAAAGGTAGGCTCCATGGGGACGAGGATTTT
TGGACCGTTTTAGATATATTAATTGATGAGACATTTCTCATTACAGAACGCCATAAGGATATTATTGTCCTCTGTTATTC
CGGGCTTGCGATCGACCACTCCATGGAAAAATGGGAGACGATCTATCAGCCTTATTATTCCTGGCTTGAAAAAATCATCA
ACAAGGCCATTGCAAACCATGAGGTAACGGAAGGAATCAATTCAAAATGGACGGCCAGAACGATTATCAACTTGGTCGAG
AATACTGCGGAACGATTCTATATCGGATTTGAACAAGATGAAAATGTTGAAGTGTATAAAAAGGAAATTTTCACTTTCTT
AAAACGGAGCTTAGGTACTGCTTAA

Upstream 100 bases:

>100_bases
AAATAAAGAAGCAAGAGGTTTTCTTGCTTCTTTATTCTTTACAAACAAACATACACGCGATAAAATGAATGAGAGTCAGT
CATTACTGGAGGTGTTCCTC

Downstream 100 bases:

>100_bases
AAAATGACTGGGTAACACCGCTCATTTTTTAATGCCCTAAAAATGACTGACGTTCATTCATAAAATAGAGAGGTGTTTCA
TTTGAATTGGGTTCTTGTTT

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDF
WTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVE
NTAERFYIGFEQDENVEVYKKEIFTFLKRSLGTA

Sequences:

>Translated_194_residues
MPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDF
WTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVE
NTAERFYIGFEQDENVEVYKKEIFTFLKRSLGTA
>Mature_193_residues
PKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDFW
TVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVEN
TAERFYIGFEQDENVEVYKKEIFTFLKRSLGTA

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVDT_BACSU (O07001)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   C70035
- RefSeq:   NP_391328.1
- PDB:   2F07
- PDBsum:   2F07
- ProteinModelPortal:   O07001
- SMR:   O07001
- EnsemblBacteria:   EBBACT00000001866
- GeneID:   936423
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34480
- NMPDR:   fig|224308.1.peg.3454
- GenoList:   BSU34480
- GeneTree:   EBGT00050000000403
- HOGENOM:   HBG338585
- OMA:   WTARTII
- ProtClustDB:   CLSK872705
- BioCyc:   BSUB:BSU34480-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 22228; Mature: 22096

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAE
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
NLLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWET
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCEEEEEECCCHHHHHHHHHHH
IYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDENVEVYK
HHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
KEIFTFLKRSLGTA
HHHHHHHHHHHCCC
>Mature Secondary Structure 
PKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAE
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
NLLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWET
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCEEEEEECCCHHHHHHHHHHH
IYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDENVEVYK
HHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
KEIFTFLKRSLGTA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377